Bra007518 (Brassica rapa)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 Bra007518 T024542_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.753 0.753
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007518.1-P BBR 1 296

Links

Other BBR family TFs
Other Brassica rapa TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
Bo8g095020 Brassica oleracea Bo8g095020 I 0.927
Bra003405 Brassica rapa Bra003405 I 0.812
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I 0.779
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I 0.771
BPC6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000489 I 0.758
Carubv10026720m.g Capsella rubella Carubv10026720m.g I 0.756
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 0.756
BPC6 Arabidopsis thaliana AT5G42520 D 0.755
Bo6g076850 Brassica oleracea Bo6g076850 I 0.753
Bra014504 Brassica rapa Bra014504 I 0.727
scaffold_200704.1 Arabidopsis lyrata scaffold_200704.1 I 0.709