BPC5 (Arabidopsis lyrata)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 fgenesh1_pm.C_scaffold_7000068 T024597_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC5
M06717_2.00
Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Dap-seq
OMalley et al.(2016)
BPC5_col_a
0.754 0.754
BPC5
M06718_2.00
Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTYTCTCYYNBYYYY
Dap-seq
OMalley et al.(2016)
BPC5_colamp_a
0.754 0.754
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_7000068 BBR 25 282

Links

Other BBR family TFs
Other Arabidopsis lyrata TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10025867m.g Eutrema salsugineum Thhalv10025867m.g I 0.785
BPC5 Arabidopsis thaliana AT4G38910 D 0.774
Bo7g119540 Brassica oleracea Bo7g119540 I 0.738
Bostr.25542s0071 Boechera stricta Bostr.25542s0071 I 0.726