CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BPC5
(
Arabidopsis lyrata
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF06217 (GAGA_bind)
IPR010409
fgenesh1_pm.C_scaffold_7000068
T024597_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BPC5
M06717_2.00
Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Dap-seq
OMalley et al.(2016)
BPC5_col_a
0.754
0.754
BPC5
M06718_2.00
Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY
Dap-seq
OMalley et al.(2016)
BPC5_colamp_a
0.754
0.754
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_7000068
BBR
25
282
RYKPDYNKGTQSVNMMPQHQIKEQHNALVMNKKIMSILAERDAAVKEINEAVAATKEALAARDEALEQRDKALSERDNAIMETESALNALRYRENNLNYILSCAKRGGSHSCVTDESHLPAPSPISTIPPEAAHTKLAKRKKESKQGARSKGKKVGEDLNRQVASPGKKSRKDWDSYDVGLNLVTFDETTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRVGGRKMSGSVFSRLLSLLTIR
Links
Other
BBR
family TFs
Other
Arabidopsis lyrata
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10025867m.g
Eutrema salsugineum
Thhalv10025867m.g
I
0.785
BPC5
Arabidopsis thaliana
AT4G38910
D
0.774
Bo7g119540
Brassica oleracea
Bo7g119540
I
0.738
Bostr.25542s0071
Boechera stricta
Bostr.25542s0071
I
0.726