CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
OMERI10G00680
(
Oryza meridionalis
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF06217 (GAGA_bind)
IPR010409
OMERI10G00680
T024676_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BPC1
M06715_2.00
Arabidopsis thaliana
GAGAGAGAGAGAGAGAGAGAGAGA
TCTCTCTCTCTCTCTCTCTCTCTC
Dap-seq
OMalley et al.(2016)
BPC1_col_a
0.738
0.738
BPC1
M06716_2.00
Arabidopsis thaliana
RAGAGAGAGARAGAR
YTCTYTCTCTCTCTY
Dap-seq
OMalley et al.(2016)
BPC1_colamp_a
0.738
0.738
BPC1
M09775_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BPC1_Q2
0.762
0.762
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OMERI10G00680.1
BBR
53
371
MDDDANMSIKWRGFFESPAKLGLQLMSGDRDTKQLLSGSPFLHHQHQQHVPHHHHQPHHPRDCGANGNANGGAMPPPPATEAPPSMPMNFVRSDMWMHPQQQQQHHHPRQHNVLHNLTVGHGSAHIAHHDPVGYGMIPGTHTLQMMQQQTEPQPQPPPPPQQPKEECISSPLIEENVPVIDEPPPPKKRQQGRQPKVPRAKKPKKSAAPREDGAPPNAPAPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYQRPFVL
OMERI10G00680.2
BBR
1
42
MSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIS
OMERI10G00680.3
BBR
1
42
MSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR
Links
Other
BBR
family TFs
Other
Oryza meridionalis
TFs
100 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy