CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400003719
(
Solanum tuberosum
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF06217 (GAGA_bind)
IPR010409
PGSC0003DMG400003719
T024696_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
0.736
0.736
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400009534
BBR
1
323
MDDSGNRDNGRHKPPQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRENAMTGGQIVRGVKHMHHPQQHVHHQPHMGEPTYNPREMHMVEAIPVSPPAPEPAKPRRNKRAKEPKAVTGSKKTPKASKKVKRETEDLNQTTYGKSPEWKGAQEMVGASDDLNRQLAVSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK
PGSC0003DMT400009535
BBR
1
323
MDDSGNRDNGRHKPPQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRENAMTGGQIVRGVKHMHHPQQHVHHQPHMGEPTYNPREMHMVEAIPVSPPAPEPAKPRRNKRAKEPKAVTGSKKTPKASKKVKRETEDLNQTTYGKSPEWKGAQEMVGASDDLNRQLAVSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK
PGSC0003DMT400009536
BBR
5
320
RVKSAKFSMYQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRENAMTGGQIVRGVKHMHHPQQHVHHQPHMGEPTYNPREMHMVEAIPVSPPAPEPAKPRRNKRAKEPKAVTGSKKTPKASKKVKRETEDLNQTTYGKSPEWKGAQEMVGASDDLNRQLAVSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK
PGSC0003DMT400009537
BBR
5
320
RVKSAKFSMYQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRENAMTGGQIVRGVKHMHHPQQHVHHQPHMGEPTYNPREMHMVEAIPVSPPAPEPAKPRRNKRAKEPKAVTGSKKTPKASKKVKRETEDLNQTTYGKSPEWKGAQEMVGASDDLNRQLAVSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK
Links
Other
BBR
family TFs
Other
Solanum tuberosum
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy