scaffold_200704.1 (Arabidopsis lyrata)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 scaffold_200704.1 T024731_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC5
M06717_2.00
Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Dap-seq
OMalley et al.(2016)
BPC5_col_a
0.855 0.855
BPC5
M06718_2.00
Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTYTCTCYYNBYYYY
Dap-seq
OMalley et al.(2016)
BPC5_colamp_a
0.855 0.855
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
0.709 0.709
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_200704.1 BBR 1 55

Links

Other BBR family TFs
Other Arabidopsis lyrata TFs

Invalid Input OrderBy

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action