VIT_18s0001g13730 (Vitis vinifera)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 VIT_18s0001g13730 T024771_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
0.770 0.770
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_18s0001g13730.t01 BBR 1 337

Links

Other BBR family TFs
Other Vitis vinifera TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30005.m001261 Ricinus communis 30005.m001261 N 0.000
Aquca_108_00051 Aquilegia coerulea Aquca_108_00051 N 0.000
Bo1g147290 Brassica oleracea Bo1g147290 N 0.000
Bra040015 Brassica rapa Bra040015 N 0.000
cassava24109.valid.m1 Manihot esculenta cassava24109.valid.m1 N 0.000
Ciclev10016354m.g Citrus clementina Ciclev10016354m.g N 0.000
Ciclev10021850m.g Citrus clementina Ciclev10021850m.g N 0.000
Cla012999 Citrullus lanatus Cla012999 N 0.000
F775_32546 Aegilops tauschii F775_32546 N 0.000
Gorai.007G162200 Gossypium raimondii Gorai.007G162200 N 0.000
Gorai.011G138900 Gossypium raimondii Gorai.011G138900 N 0.000
GRMZM2G053557 Zea mays GRMZM2G053557 N 0.000
GSMUA_Achr3G19260_001 Musa acuminata GSMUA_Achr3G19260_001 N 0.000
GSMUA_Achr6G28720_001 Musa acuminata GSMUA_Achr6G28720_001 N 0.000
GSMUA_Achr9G08210_001 Musa acuminata GSMUA_Achr9G08210_001 N 0.000
Lus10025581.g Linum usitatissimum Lus10025581.g N 0.000
Lus10025582.g Linum usitatissimum Lus10025582.g N 0.000
Lus10027045.g Linum usitatissimum Lus10027045.g N 0.000
MDP0000184998 Malus domestica MDP0000184998 N 0.000
MDP0000716430 Malus domestica MDP0000716430 N 0.000
mgf025428m Mimulus guttatus mgf025428m N 0.000
MTR_2g099155 Medicago truncatula MTR_2g099155 N 0.000
orange1.1g024388m.g Citrus sinensis orange1.1g024388m.g N 0.000
orange1.1g025458m.g Citrus sinensis orange1.1g025458m.g N 0.000
Pavir.Ga01503 Panicum virgatum Pavir.Ga01503 N 0.000
PGSC0003DMG400020996 Solanum tuberosum PGSC0003DMG400020996 N 0.000
Pm007242 Prunus mume Pm007242 N 0.000
POPTR_0014s17210 Populus trichocarpa POPTR_0014s17210 N 0.000
POPTR_0017s05170 Populus trichocarpa POPTR_0017s05170 N 0.000
PRUPE_ppa010592mg Prunus persica PRUPE_ppa010592mg N 0.000
SapurV1A.0947s0070 Salix purpurea SapurV1A.0947s0070 N 0.000
SapurV1A.1186s0090 Salix purpurea SapurV1A.1186s0090 N 0.000
Sb06g021360 Sorghum bicolor Sb06g021360 N 0.000
Si010917m.g Setaria italica Si010917m.g N 0.000
Solyc08g013980.2 Solanum lycopersicum Solyc08g013980.2 N 0.000
TCM_002550 Theobroma cacao TCM_002550 N 0.000
TCM_019960 Theobroma cacao TCM_019960 N 0.000
TCM_019968 Theobroma cacao TCM_019968 N 0.000
Traes_2AL_6990211D0 Triticum aestivum Traes_2AL_6990211D0 N 0.000
Traes_2BL_7B5109B55 Triticum aestivum Traes_2BL_7B5109B55 N 0.000
Traes_2DL_B72450387 Triticum aestivum Traes_2DL_B72450387 N 0.000