Pm006246 (Prunus mume)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Pm006246 T024785_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
0.734 0.734
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm006246 BBR 30 360

Links

Other BBR family TFs
Other Prunus mume TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BPC6 Arabidopsis thaliana AT5G42520 D 0.734
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 0.749
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I 0.745
Carubv10026720m.g Capsella rubella Carubv10026720m.g I 0.738
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I 0.768
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I 0.798
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I 0.897
Gorai.002G124900 Gossypium raimondii Gorai.002G124900 I 0.739
Lus10012389.g Linum usitatissimum Lus10012389.g I 0.765
Lus10024313.g Linum usitatissimum Lus10024313.g I 0.760
MDP0000933138 Malus domestica MDP0000933138 I 0.896
MDP0000947167 Malus domestica MDP0000947167 I 0.877
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I 0.768
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I 0.802
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I 0.773
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I 0.745
PK03443.1 Cannabis sativa PK03443.1 I 0.795
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
Cucsa.159750 Cucumis sativus Cucsa.159750 I 0.781
Bo6g076850 Brassica oleracea Bo6g076850 I 0.711
Bra003405 Brassica rapa Bra003405 I 0.789
BPC6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000489 I 0.708
GLYMA04G02860 Glycine max GLYMA04G02860 I 0.810
GLYMA06G02880 Glycine max GLYMA06G02880 I 0.810
MTR_1g023660 Medicago truncatula MTR_1g023660 I 0.741
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I 0.791
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I 0.806
POPTR_0005s25720 Populus trichocarpa POPTR_0005s25720 I 0.798
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I 0.981
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I 0.779
TCM_034171 Theobroma cacao TCM_034171 I 0.779
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I 0.806
Cla022781 Citrullus lanatus Cla022781 I 0.770
30170.m014145 Ricinus communis 30170.m014145 I 0.802
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I 0.795
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I 0.810