cassava39873.m1 (Manihot esculenta)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 cassava39873.m1 T024798_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava39873.m1 BBR 1 280

Links

Other BBR family TFs
Other Manihot esculenta TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 1.000
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 1.000
cassava18077.valid.m1 Manihot esculenta cassava18077.valid.m1 N 0.952
cassava18078.valid.m1 Manihot esculenta cassava18078.valid.m1 N 0.952
29780.m001393 Ricinus communis 29780.m001393 N 0.919
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.859
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.857
Pm005924 Prunus mume Pm005924 N 0.848
PRUPE_ppa009765mg Prunus persica PRUPE_ppa009765mg N 0.844
POPTR_0010s11180 Populus trichocarpa POPTR_0010s11180 N 0.841
POPTR_0008s13960 Populus trichocarpa POPTR_0008s13960 N 0.834
TCM_011212 Theobroma cacao TCM_011212 N 0.828
MDP0000826219 Malus domestica MDP0000826219 N 0.828
SapurV1A.0015s0840 Salix purpurea SapurV1A.0015s0840 N 0.821
Gorai.002G171200 Gossypium raimondii Gorai.002G171200 N 0.814
MDP0000320521 Malus domestica MDP0000320521 N 0.813
Ciclev10015354m.g Citrus clementina Ciclev10015354m.g N 0.809
SapurV1A.0055s0040 Salix purpurea SapurV1A.0055s0040 N 0.808
evm.TU.supercontig_2.121 Carica papaya evm.TU.supercontig_2.121 N 0.807
PK28293.1 Cannabis sativa PK28293.1 N 0.806
chr4.CM0387.290.nc Lotus japonicus chr4.CM0387.290.nc N 0.806
orange1.1g022806m.g Citrus sinensis orange1.1g022806m.g N 0.802
Eucgr.G02067 Eucalyptus grandis Eucgr.G02067 N 0.784
gene00620-v1.0-hybrid Fragaria vesca gene00620-v1.0-hybrid N 0.782
GLYMA08G09780 Glycine max GLYMA08G09780 N 0.779
GLYMA05G26790 Glycine max GLYMA05G26790 N 0.768
Cla005911 Citrullus lanatus Cla005911 N 0.765
Gorai.005G154200 Gossypium raimondii Gorai.005G154200 N 0.756
Gorai.012G183100 Gossypium raimondii Gorai.012G183100 N 0.747
Cucsa.026600 Cucumis sativus Cucsa.026600 N 0.746
Lus10040427.g Linum usitatissimum Lus10040427.g N 0.744
VIT_01s0011g06380 Vitis vinifera VIT_01s0011g06380 N 0.734
VIT_17s0000g01860 Vitis vinifera VIT_17s0000g01860 N 0.728
PGSC0003DMG402029444 Solanum tuberosum PGSC0003DMG402029444 N 0.725
Lus10023543.g Linum usitatissimum Lus10023543.g N 0.722
Cla005912 Citrullus lanatus Cla005912 N 0.711
Cucsa.026590 Cucumis sativus Cucsa.026590 N 0.707
Solyc04g008380.2 Solanum lycopersicum Solyc04g008380.2 N 0.707
Gorai.012G183200 Gossypium raimondii Gorai.012G183200 N 0.706