CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.026600
(
Cucumis sativus
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF06217 (GAGA_bind)
IPR010409
Cucsa.026600
T024800_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.026600.1
BBR
1
279
MDDDALNMRNWGYYEPSFKGHLGLQLMSTISERDMKHFLPGRDPSVMVNANGSFHPRDCVVSEAPVHMNYVRDNWGGNRDRFLNMLPTNHSYPVMPETSGAHSLQILQPPSSSRDEIAASRVEEPPVKKEGGKAKKRQSSEAGPKAPKAKKPRKPKDTSTAVQRVKPPKKNIDLVINGIDMDISCIPIPVCSCTGAPHQCYRWGCGGWQSACCTTNISTYPLPMSDKRRGARIAGRKMSQGAFKKVLEKLAADGYNFANPIDLRTHWARHGTNKFVTIR
Links
Other
BBR
family TFs
Other
Cucumis sativus
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla005911
Citrullus lanatus
Cla005911
N
0.919
orange1.1g022806m.g
Citrus sinensis
orange1.1g022806m.g
N
0.761
Pm005924
Prunus mume
Pm005924
N
0.750
cassava18077.valid.m1
Manihot esculenta
cassava18077.valid.m1
N
0.746
cassava39873.m1
Manihot esculenta
cassava39873.m1
N
0.746
GLYMA05G26790
Glycine max
GLYMA05G26790
N
0.746
cassava18078.valid.m1
Manihot esculenta
cassava18078.valid.m1
N
0.746
PRUPE_ppa009765mg
Prunus persica
PRUPE_ppa009765mg
N
0.746
evm.TU.supercontig_2.121
Carica papaya
evm.TU.supercontig_2.121
N
0.741
MDP0000826219
Malus domestica
MDP0000826219
N
0.739
TCM_011212
Theobroma cacao
TCM_011212
N
0.735
29780.m001393
Ricinus communis
29780.m001393
N
0.732
Ciclev10015354m.g
Citrus clementina
Ciclev10015354m.g
N
0.731
chr4.CM0387.290.nc
Lotus japonicus
chr4.CM0387.290.nc
N
0.724
GLYMA08G09780
Glycine max
GLYMA08G09780
N
0.724
Gorai.002G171200
Gossypium raimondii
Gorai.002G171200
N
0.721
Eucgr.G02067
Eucalyptus grandis
Eucgr.G02067
N
0.718
MDP0000320521
Malus domestica
MDP0000320521
N
0.717
POPTR_0010s11180
Populus trichocarpa
POPTR_0010s11180
N
0.710
PK28293.1
Cannabis sativa
PK28293.1
N
0.706