Ocbimv22014894m.g (Octopus bimaculoides)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Ocbimv22014894m.g T024814_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00 		Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a 		1.000 1.000
BPC5
M06718_2.00 		Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a 		1.000 1.000
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22014894m.p BBR 9 218

Links

Other BBR family TFs
Other Octopus bimaculoides TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I 1.000
Ciclev10028887m.g Citrus clementina Ciclev10028887m.g N 1.000
Carubv10026720m.g Capsella rubella Carubv10026720m.g I 1.000
Carubv10023994m.g Capsella rubella Carubv10023994m.g N 1.000
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I 1.000
Carubv10023579m.g Capsella rubella Carubv10023579m.g N 1.000
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I 1.000
Eucgr.E01260 Eucalyptus grandis Eucgr.E01260 N 1.000
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I 1.000
Gorai.001G243700 Gossypium raimondii Gorai.001G243700 N 1.000
gene01678-v1.0-hybrid Fragaria vesca gene01678-v1.0-hybrid N 1.000
evm.TU.supercontig_150.9 Carica papaya evm.TU.supercontig_150.9 N 1.000
Eucgr.I01334 Eucalyptus grandis Eucgr.I01334 N 1.000
Cagra.2961s0028 Capsella grandiflora Cagra.2961s0028 N 1.000
Cagra.0993s0065 Capsella grandiflora Cagra.0993s0065 N 1.000
Cucsa.159750 Cucumis sativus Cucsa.159750 I 1.000
mgf005948m Mimulus guttatus mgf005948m N 1.000
cassava38274.valid.m1 Manihot esculenta cassava38274.valid.m1 N 1.000
cassava37681.valid.m1 Manihot esculenta cassava37681.valid.m1 N 1.000
cassava24959.valid.m1 Manihot esculenta cassava24959.valid.m1 N 1.000
Aquca_005_00609 Aquilegia coerulea Aquca_005_00609 N 1.000
Aquca_006_00158 Aquilegia coerulea Aquca_006_00158 N 1.000
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 1.000
Bostr.5022s0111 Boechera stricta Bostr.5022s0111 N 1.000
Bostr.25542s0071 Boechera stricta Bostr.25542s0071 I 1.000
Bostr.23794s0547 Boechera stricta Bostr.23794s0547 N 1.000
Aquca_007_00374 Aquilegia coerulea Aquca_007_00374 N 1.000
Gorai.002G124900 Gossypium raimondii Gorai.002G124900 I 1.000
Gorai.004G181000 Gossypium raimondii Gorai.004G181000 N 1.000
Thhalv10000273m.g Eutrema salsugineum Thhalv10000273m.g N 1.000
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I 1.000
SapurV1A.1169s0060 Salix purpurea SapurV1A.1169s0060 N 1.000
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I 1.000
SapurV1A.0091s0140 Salix purpurea SapurV1A.0091s0140 N 1.000
SapurV1A.0379s0280 Salix purpurea SapurV1A.0379s0280 N 1.000
Thhalv10017196m.g Eutrema salsugineum Thhalv10017196m.g N 1.000
Thhalv10025867m.g Eutrema salsugineum Thhalv10025867m.g I 1.000
chr4.CM0175.470.nc Lotus japonicus chr4.CM0175.470.nc N 1.000
PDK_20s1445653g002 Phoenix dactylifera PDK_20s1445653g002 N 1.000
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I 1.000
PK03443.1 Cannabis sativa PK03443.1 I 1.000
PK01854.1 Cannabis sativa PK01854.1 N 1.000
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I 1.000
orange1.1g021524m.g Citrus sinensis orange1.1g021524m.g N 1.000
Lus10024313.g Linum usitatissimum Lus10024313.g I 1.000
Lus10031078.g Linum usitatissimum Lus10031078.g N 1.000
Lus10018060.g Linum usitatissimum Lus10018060.g N 1.000
Lus10012389.g Linum usitatissimum Lus10012389.g I 1.000
Gorai.008G222300 Gossypium raimondii Gorai.008G222300 N 1.000
Lus10035462.g Linum usitatissimum Lus10035462.g N 1.000
Lus10042056.g Linum usitatissimum Lus10042056.g N 1.000
MDP0000947167 Malus domestica MDP0000947167 I 1.000
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I 1.000
MDP0000933138 Malus domestica MDP0000933138 I 1.000
MDP0000802164 Malus domestica MDP0000802164 N 1.000
MDP0000517554 Malus domestica MDP0000517554 N 1.000
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I 1.000
30170.m014145 Ricinus communis 30170.m014145 I 1.000
Bra033583 Brassica rapa Bra033583 N 1.000
BPC6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000489 I 1.000
Bra030308 Brassica rapa Bra030308 N 1.000
Bra023013 Brassica rapa Bra023013 N 1.000
Bra010720 Brassica rapa Bra010720 N 1.000
Bra014504 Brassica rapa Bra014504 I 1.000
BPC7 Arabidopsis lyrata fgenesh2_kg.4__1574__AT2G35550.4 N 1.000
BPC4 Arabidopsis lyrata fgenesh2_kg.4__42__AT2G21240.1 N 1.000
GLYMA08G01240 Glycine max GLYMA08G01240 N 1.000
GSMUA_Achr4G24910_001 Musa acuminata GSMUA_Achr4G24910_001 N 1.000
GLYMA06G02880 Glycine max GLYMA06G02880 I 1.000
GLYMA05G38430 Glycine max GLYMA05G38430 N 1.000
GLYMA04G02860 Glycine max GLYMA04G02860 I 1.000
Bra007518 Brassica rapa Bra007518 I 1.000
Bra003405 Brassica rapa Bra003405 I 1.000
BPC7 Arabidopsis thaliana AT2G35550 N 1.000
BPC5 Arabidopsis thaliana AT4G38910 D 1.000
BPC4 Arabidopsis thaliana AT2G21240 N 1.000
AMTR_s00185p00053620 Amborella trichopoda AMTR_s00185p00053620 I 1.000
AMTR_s00024p00090860 Amborella trichopoda AMTR_s00024p00090860 N 1.000
BPC6 Arabidopsis thaliana AT5G42520 D 1.000
Bo3g028310 Brassica oleracea Bo3g028310 N 1.000
Bo7g119540 Brassica oleracea Bo7g119540 I 1.000
Bo8g095020 Brassica oleracea Bo8g095020 I 1.000
Bo6g076850 Brassica oleracea Bo6g076850 I 1.000
Bo4g145820 Brassica oleracea Bo4g145820 N 1.000
Bo3g149640 Brassica oleracea Bo3g149640 I 1.000
GSMUA_Achr5G03330_001 Musa acuminata GSMUA_Achr5G03330_001 N 1.000
MTR_1g023660 Medicago truncatula MTR_1g023660 I 1.000
VIT_03s0038g00840 Vitis vinifera VIT_03s0038g00840 N 1.000
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I 1.000
TCM_034171 Theobroma cacao TCM_034171 I 1.000
TCM_016638 Theobroma cacao TCM_016638 N 1.000
TCM_006767 Theobroma cacao TCM_006767 N 1.000
Ca_05693 Cicer arietinum Ca_05693 N 1.000
Ca_10756 Cicer arietinum Ca_10756 N 1.000
30068.m002670 Ricinus communis 30068.m002670 N 1.000
30131.m007143 Ricinus communis 30131.m007143 N 1.000
Pm021667 Prunus mume Pm021667 N 1.000
Pm006246 Prunus mume Pm006246 I 1.000
Cla022781 Citrullus lanatus Cla022781 I 1.000
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I 1.000
Solyc01g110470.2 Solanum lycopersicum Solyc01g110470.2 N 1.000
POPTR_0001s01620 Populus trichocarpa POPTR_0001s01620 N 1.000
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I 1.000
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I 1.000
PGSC0003DMG400001660 Solanum tuberosum PGSC0003DMG400001660 N 1.000
MTR_8g099780 Medicago truncatula MTR_8g099780 N 1.000
POPTR_0004s17060 Populus trichocarpa POPTR_0004s17060 N 1.000
POPTR_0005s25720 Populus trichocarpa POPTR_0005s25720 I 1.000
PRUPE_ppa008471mg Prunus persica PRUPE_ppa008471mg N 1.000
scaffold_200704.1 Arabidopsis lyrata scaffold_200704.1 I 1.000
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I 1.000
POPTR_0012s03750 Populus trichocarpa POPTR_0012s03750 N 1.000
POPTR_0009s12820 Populus trichocarpa POPTR_0009s12820 N 1.000
AMTR_s00006p00254090 Amborella trichopoda AMTR_s00006p00254090 N 1.000