Cagra.3834s0005 (Capsella grandiflora)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Cagra.3834s0005 T024832_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC1
M06715_2.00 		Arabidopsis thaliana
GAGAGAGAGAGAGAGAGAGAGAGA
TCTCTCTCTCTCTCTCTCTCTCTC		 Dap-seq
OMalley et al.(2016)
BPC1_col_a 		0.787 0.787
BPC1
M06716_2.00 		Arabidopsis thaliana
RAGAGAGAGARAGAR
YTCTYTCTCTCTCTY		 Dap-seq
OMalley et al.(2016)
BPC1_colamp_a 		0.787 0.787
BPC1
M09775_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BPC1_Q2 		0.787 0.787
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3834s0005.1.p BBR 1 284
Cagra.3834s0005.2.p BBR 5 200
Cagra.3834s0005.3.p BBR 5 200

Links

Other BBR family TFs
Other Capsella grandiflora TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 1.000
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 1.000
Carubv10017779m.g Capsella rubella Carubv10017779m.g I 0.993
BPC1 Arabidopsis lyrata fgenesh2_kg.5__107__AT2G01930.1 I 0.875
Bostr.0556s0021 Boechera stricta Bostr.0556s0021 I 0.860
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.808
BPC1 Arabidopsis thaliana AT2G01930 D 0.787
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.786
Bo8g066170 Brassica oleracea Bo8g066170 N 0.708