Carubv10017779m.g (Capsella rubella)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Carubv10017779m.g T024835_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC1
M06715_2.00
Arabidopsis thaliana
GAGAGAGAGAGAGAGAGAGAGAGA

TCTCTCTCTCTCTCTCTCTCTCTC
Dap-seq
OMalley et al.(2016)
BPC1_col_a
0.787 0.787
BPC1
M06716_2.00
Arabidopsis thaliana
RAGAGAGAGARAGAR

YTCTYTCTCTCTCTY
Dap-seq
OMalley et al.(2016)
BPC1_colamp_a
0.787 0.787
BPC1
M09775_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BPC1_Q2
0.787 0.787
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017779m BBR 1 284

Links

Other BBR family TFs
Other Capsella rubella TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.0556s0021 Boechera stricta Bostr.0556s0021 I 0.860
BPC1 Arabidopsis thaliana AT2G01930 D 0.787
BPC1 Arabidopsis lyrata fgenesh2_kg.5__107__AT2G01930.1 I 0.882
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 1.000
Cagra.3834s0005 Capsella grandiflora Cagra.3834s0005 I 0.993
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 1.000