CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10026720m.g
(
Capsella rubella
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF06217 (GAGA_bind)
IPR010409
Carubv10026720m.g
T024840_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
0.930
0.930
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10026720m
BBR
1
343
MDDGGHRENGRHKAAQGQWMMQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAASANMSACPPGCQISRGVKNMHHPHMHHHHHQQHHIPQLTENAYEPREMEPNDGLPTSPTAGSVLESAKPKRGKRVKDPKTTTQTAANKRGTKNQRKVKKESEDDLTKIMFLKTTHDYTEEDSSKHILIGSKSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK
Carubv10026732m
BBR
1
339
MDDGGHRENGRHKAAQGQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAASANMSACPPGCQISRGVKNMHHPHMHHHHHQQHHIPQLTENAYEPREMEPNDGLPTSPTAGSVLESAKPKRGKRVKDPKTTTQTAANKRGTKNQRKVKKESEDDLTKIMFLKTTHDYTEEDSSKHILIGSKSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK
Links
Other
BBR
family TFs
Other
Capsella rubella
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ocbimv22014894m.g
Octopus bimaculoides
Ocbimv22014894m.g
I
1.000
Cagra.9562s0001
Capsella grandiflora
Cagra.9562s0001
I
0.967
Bostr.3148s0250
Boechera stricta
Bostr.3148s0250
I
0.956
BPC6
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8000489
I
0.946
Thhalv10006075m.g
Eutrema salsugineum
Thhalv10006075m.g
I
0.934
BPC6
Arabidopsis thaliana
AT5G42520
D
0.930
Bra003405
Brassica rapa
Bra003405
I
0.872
Bo6g076850
Brassica oleracea
Bo6g076850
I
0.849
Bra014504
Brassica rapa
Bra014504
I
0.801
GLYMA04G02860
Glycine max
GLYMA04G02860
I
0.770
Ciclev10001400m.g
Citrus clementina
Ciclev10001400m.g
I
0.762
POPTR_0002s02820
Populus trichocarpa
POPTR_0002s02820
I
0.760
SapurV1A.0025s0690
Salix purpurea
SapurV1A.0025s0690
I
0.758
Lus10012389.g
Linum usitatissimum
Lus10012389.g
I
0.758
Bra007518
Brassica rapa
Bra007518
I
0.756
orange1.1g018368m.g
Citrus sinensis
orange1.1g018368m.g
I
0.753
VIT_18s0001g13730
Vitis vinifera
VIT_18s0001g13730
I
0.753
Lus10024313.g
Linum usitatissimum
Lus10024313.g
I
0.750
gene08483-v1.0-hybrid
Fragaria vesca
gene08483-v1.0-hybrid
I
0.745
GLYMA06G02880
Glycine max
GLYMA06G02880
I
0.745
cassava22532.valid.m1
Manihot esculenta
cassava22532.valid.m1
I
0.745
chr1.CM0195.10.nd
Lotus japonicus
chr1.CM0195.10.nd
I
0.743
30170.m014145
Ricinus communis
30170.m014145
I
0.742
POPTR_0005s25720
Populus trichocarpa
POPTR_0005s25720
I
0.742
SapurV1A.0762s0100
Salix purpurea
SapurV1A.0762s0100
I
0.740
PGSC0003DMG400003719
Solanum tuberosum
PGSC0003DMG400003719
I
0.740
Pm006246
Prunus mume
Pm006246
I
0.738
Cucsa.159750
Cucumis sativus
Cucsa.159750
I
0.737
Bo8g095020
Brassica oleracea
Bo8g095020
I
0.735
PK03443.1
Cannabis sativa
PK03443.1
I
0.734
PRUPE_ppa008316mg
Prunus persica
PRUPE_ppa008316mg
I
0.734
TCM_034171
Theobroma cacao
TCM_034171
I
0.734
MDP0000933138
Malus domestica
MDP0000933138
I
0.731
Gorai.002G124900
Gossypium raimondii
Gorai.002G124900
I
0.731
Solyc04g081170.2
Solanum lycopersicum
Solyc04g081170.2
I
0.727
MDP0000947167
Malus domestica
MDP0000947167
I
0.720
Cla022781
Citrullus lanatus
Cla022781
I
0.715
Eucgr.D01054
Eucalyptus grandis
Eucgr.D01054
I
0.712
MTR_1g023660
Medicago truncatula
MTR_1g023660
I
0.703