Carubv10026720m.g (Capsella rubella)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Carubv10026720m.g T024840_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
0.930 0.930
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026720m BBR 1 343
Carubv10026732m BBR 1 339

Links

Other BBR family TFs
Other Capsella rubella TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30170.m014145 Ricinus communis 30170.m014145 I 0.742
BPC6 Arabidopsis thaliana AT5G42520 D 0.930
Bo6g076850 Brassica oleracea Bo6g076850 I 0.849
Bo8g095020 Brassica oleracea Bo8g095020 I 0.735
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 0.956
Bra003405 Brassica rapa Bra003405 I 0.872
Bra007518 Brassica rapa Bra007518 I 0.756
Bra014504 Brassica rapa Bra014504 I 0.801
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I 0.967
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I 0.745
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I 0.743
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I 0.762
Cla022781 Citrullus lanatus Cla022781 I 0.715
Cucsa.159750 Cucumis sativus Cucsa.159750 I 0.737
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I 0.712
BPC6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000489 I 0.946
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I 0.745
GLYMA04G02860 Glycine max GLYMA04G02860 I 0.770
GLYMA06G02880 Glycine max GLYMA06G02880 I 0.745
Gorai.002G124900 Gossypium raimondii Gorai.002G124900 I 0.731
Lus10012389.g Linum usitatissimum Lus10012389.g I 0.758
Lus10024313.g Linum usitatissimum Lus10024313.g I 0.750
MDP0000933138 Malus domestica MDP0000933138 I 0.731
MDP0000947167 Malus domestica MDP0000947167 I 0.720
MTR_1g023660 Medicago truncatula MTR_1g023660 I 0.703
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I 0.753
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I 0.740
PK03443.1 Cannabis sativa PK03443.1 I 0.734
Pm006246 Prunus mume Pm006246 I 0.738
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I 0.760
POPTR_0005s25720 Populus trichocarpa POPTR_0005s25720 I 0.742
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I 0.734
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I 0.758
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I 0.740
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I 0.727
TCM_034171 Theobroma cacao TCM_034171 I 0.734
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I 0.934
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I 0.753