Carubv10026720m.g (Capsella rubella)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Carubv10026720m.g T024840_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
0.930 0.930
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026720m BBR 1 343
Carubv10026732m BBR 1 339

Links

Other BBR family TFs
Other Capsella rubella TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CADANGAG00001928 Aspergillus niger CADANGAG00001928 N 0.000
CHGG_00926 Chaetomium globosum CHGG_00926 N 0.000
Cob_01477 Colletotrichum orbiculare Cob_01477 N 0.000
COCC4DRAFT_64454 Bipolaris maydis COCC4DRAFT_64454 N 0.000
OCS_06132 Ophiocordyceps sinensis OCS_06132 N 0.000
PITC_016440 Penicillium italicum PITC_016440 N 0.000
PODANS_3_4320 Podospora anserina PODANS_3_4320 N 0.000
PV06_08153 Exophiala oligosperma PV06_08153 N 0.000
S40285_04043 Stachybotrys chlorohalonata S40285_04043 N 0.000
S40285_05664 Stachybotrys chlorohalonata S40285_05664 N 0.000
S40288_04224 Stachybotrys chartarum S40288_04224 N 0.000
SAPIO_CDS3191 Scedosporium apiospermum SAPIO_CDS3191 N 0.000
U727_00434363211 Penicillium solitum U727_00434363211 N 0.000
X797_009461 Metarhizium robertsii X797_009461 N 0.000
Z517_03843 Fonsecaea pedrosoi Z517_03843 N 0.000