TF Information

Carubv10026720m.g *(Capsella rubella)* BBR
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF06217 (GAGA_bind)	IPR010409	Carubv10026720m.g	T024840_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
BPC6 M06719_2.00	Arabidopsis thaliana	KAGAGAGAGAGAGAGAGAGAG	CTCTCTCTCTCTCTCTCTCTM	Dap-seq OMalley et al.(2016) BPC6_col_a	0.930	0.930
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Carubv10026720m	BBR	1	343	MDDGGHRENGRHKAAQGQWMMQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAASANMSACPPGCQISRGVKNMHHPHMHHHHHQQHHIPQLTENAYEPREMEPNDGLPTSPTAGSVLESAKPKRGKRVKDPKTTTQTAANKRGTKNQRKVKKESEDDLTKIMFLKTTHDYTEEDSSKHILIGSKSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK
Carubv10026732m	BBR	1	339	MDDGGHRENGRHKAAQGQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAASANMSACPPGCQISRGVKNMHHPHMHHHHHQQHHIPQLTENAYEPREMEPNDGLPTSPTAGSVLESAKPKRGKRVKDPKTTTQTAANKRGTKNQRKVKKESEDDLTKIMFLKTTHDYTEEDSSKHILIGSKSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK

Links
Other BBR family TFs
Other *Capsella rubella* TFs

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40 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action