gene08483-v1.0-hybrid (Fragaria vesca)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 gene08483-v1.0-hybrid T024855_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
0.739 0.739
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna08483.1-v1.0-hybrid BBR 40 380

Links

Other BBR family TFs
Other Fragaria vesca TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_045_00093 Aquilegia coerulea Aquca_045_00093 N 0.000
ATNFXL2 Vitis vinifera VIT_13s0067g00920 N 0.000
Bo9g177030 Brassica oleracea Bo9g177030 N 0.000
Bra009123 Brassica rapa Bra009123 N 0.000
Cagra.1504s0067 Capsella grandiflora Cagra.1504s0067 N 0.000
Carubv10003051m.g Capsella rubella Carubv10003051m.g N 0.000
cassava20878.m1 Manihot esculenta cassava20878.m1 N 0.000
Ciclev10030684m.g Citrus clementina Ciclev10030684m.g N 0.000
Cucsa.136670 Cucumis sativus Cucsa.136670 N 0.000
Eucgr.J00206 Eucalyptus grandis Eucgr.J00206 N 0.000
evm.TU.supercontig_19.173 Carica papaya evm.TU.supercontig_19.173 N 0.000
GLYMA18G03080 Glycine max GLYMA18G03080 N 0.000
Gorai.010G197800 Gossypium raimondii Gorai.010G197800 N 0.000
GRMZM2G139369 Zea mays GRMZM2G139369 N 0.000
LjT47B05.50.nd Lotus japonicus LjT47B05.50.nd N 0.000
mgf001689m Mimulus guttatus mgf001689m N 0.000
MTR_3g070780 Medicago truncatula MTR_3g070780 N 0.000
NFXL2 Arabidopsis thaliana AT5G05660 N 0.000
Pavir.J07154 Panicum virgatum Pavir.J07154 N 0.000
PK03289.1 Cannabis sativa PK03289.1 N 0.000
Pm018929 Prunus mume Pm018929 N 0.000
POPTR_0010s19600 Populus trichocarpa POPTR_0010s19600 N 0.000
PRUPE_ppa001277mg Prunus persica PRUPE_ppa001277mg N 0.000
SapurV1A.0061s0270 Salix purpurea SapurV1A.0061s0270 N 0.000
Sb03g005310 Sorghum bicolor Sb03g005310 N 0.000
Solyc06g051570.2 Solanum lycopersicum Solyc06g051570.2 N 0.000
TCM_042496 Theobroma cacao TCM_042496 N 0.000
Thhalv10012642m.g Eutrema salsugineum Thhalv10012642m.g N 0.000