CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo4g107870
(
Brassica oleracea
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02892 (zf-BED)
IPR003656
Bo4g107870
T025645_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo4g107870.1
BED ZF
126
177
SMVWEHFTIETTSPGSSKACCKHCRKSFAYITGQKLAGTSHLKRHIQLGICP
Links
Other
BED ZF
family TFs
Other
Brassica oleracea
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.20129s0513
Boechera stricta
Bostr.20129s0513
N
0.977
Carubv10019720m.g
Capsella rubella
Carubv10019720m.g
N
0.955
Cagra.1725s0137
Capsella grandiflora
Cagra.1725s0137
N
0.955
Bo6g067130
Brassica oleracea
Bo6g067130
N
0.932
Thhalv10022530m.g
Eutrema salsugineum
Thhalv10022530m.g
N
0.886
Eucgr.F03885
Eucalyptus grandis
Eucgr.F03885
N
0.841
cassava11655.m1
Manihot esculenta
cassava11655.m1
N
0.841
POPTR_0001s20900
Populus trichocarpa
POPTR_0001s20900
N
0.841
POPTR_0003s02610
Populus trichocarpa
POPTR_0003s02610
N
0.841
SapurV1A.0199s0250
Salix purpurea
SapurV1A.0199s0250
N
0.841
SapurV1A.0344s0280
Salix purpurea
SapurV1A.0344s0280
N
0.841
VIT_09s0002g07340
Vitis vinifera
VIT_09s0002g07340
N
0.818
Pm013703
Prunus mume
Pm013703
N
0.818
PRUPE_ppa002495mg
Prunus persica
PRUPE_ppa002495mg
N
0.818
PGSC0003DMG400019816
Solanum tuberosum
PGSC0003DMG400019816
N
0.795
gene15718-v1.0-hybrid
Fragaria vesca
gene15718-v1.0-hybrid
N
0.795
Solyc03g116840.1
Solanum lycopersicum
Solyc03g116840.1
N
0.795
TCM_027266
Theobroma cacao
TCM_027266
N
0.773
Eucgr.C01383
Eucalyptus grandis
Eucgr.C01383
N
0.773
GLYMA13G22855
Glycine max
GLYMA13G22855
N
0.773
GLYMA13G22881
Glycine max
GLYMA13G22881
N
0.773
Gorai.010G137500
Gossypium raimondii
Gorai.010G137500
N
0.773
MDP0000394762
Malus domestica
MDP0000394762
N
0.750
OB08G27840
Oryza brachyantha
OB08G27840
N
0.750
orange1.1g002915m.g
Citrus sinensis
orange1.1g002915m.g
N
0.750
mgf025287m
Mimulus guttatus
mgf025287m
N
0.750
Pavir.Ia00683
Panicum virgatum
Pavir.Ia00683
N
0.750
PK27100.1
Cannabis sativa
PK27100.1
N
0.750
Si034159m.g
Setaria italica
Si034159m.g
N
0.750
GLYMA17G11981
Glycine max
GLYMA17G11981
N
0.750
Pavir.J05554
Panicum virgatum
Pavir.J05554
N
0.750
gene30791-v1.0-hybrid
Fragaria vesca
gene30791-v1.0-hybrid
N
0.750
Ciclev10007308m.g
Citrus clementina
Ciclev10007308m.g
N
0.750
gene31107-v1.0-hybrid
Fragaria vesca
gene31107-v1.0-hybrid
N
0.750
POPTR_0004s12760
Populus trichocarpa
POPTR_0004s12760
N
0.744
VIT_11s0016g05750
Vitis vinifera
VIT_11s0016g05750
N
0.727
Ciclev10025036m.g
Citrus clementina
Ciclev10025036m.g
N
0.727
Carubv10008021m.g
Capsella rubella
Carubv10008021m.g
N
0.727
Cagra.13611s0003
Capsella grandiflora
Cagra.13611s0003
N
0.727
orange1.1g005485m.g
Citrus sinensis
orange1.1g005485m.g
N
0.727
Gorai.004G107300
Gossypium raimondii
Gorai.004G107300
N
0.727
Traes_4BS_D5227ED8B
Triticum aestivum
Traes_4BS_D5227ED8B
N
0.727
Sb01g009090
Sorghum bicolor
Sb01g009090
N
0.727
GSMUA_Achr8G29120_001
Musa acuminata
GSMUA_Achr8G29120_001
N
0.727
PRUPE_ppa001983mg
Prunus persica
PRUPE_ppa001983mg
N
0.727
GSMUA_Achr3G16690_001
Musa acuminata
GSMUA_Achr3G16690_001
N
0.727
MLOC_75540
Hordeum vulgare
MLOC_75540
N
0.727
OB08G27850
Oryza brachyantha
OB08G27850
N
0.727
fgenesh1_pm.C_scaffold_5000603
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5000603
N
0.727
Sb02g043380
Sorghum bicolor
Sb02g043380
N
0.727
TCM_038144
Theobroma cacao
TCM_038144
N
0.727
Traes_4AL_54F25AA7C
Triticum aestivum
Traes_4AL_54F25AA7C
N
0.727
Traes_4DS_990D31BB1
Triticum aestivum
Traes_4DS_990D31BB1
N
0.727
POPTR_0004s12810
Populus trichocarpa
POPTR_0004s12810
N
0.721
Bo8g066350
Brassica oleracea
Bo8g066350
N
0.705
Pavir.Eb00997
Panicum virgatum
Pavir.Eb00997
N
0.705
Pavir.Eb00995
Panicum virgatum
Pavir.Eb00995
N
0.705
GLYMA13G44351
Glycine max
GLYMA13G44351
N
0.705
PK28412.1
Cannabis sativa
PK28412.1
N
0.705
Pavir.J31170
Panicum virgatum
Pavir.J31170
N
0.705
GLYMA07G03280
Glycine max
GLYMA07G03280
N
0.705
SapurV1A.0197s0170
Salix purpurea
SapurV1A.0197s0170
N
0.705
Thhalv10009614m.g
Eutrema salsugineum
Thhalv10009614m.g
N
0.705
BRADI3G40810
Brachypodium distachyon
BRADI3G40810
N
0.705
SapurV1A.0034s0250
Salix purpurea
SapurV1A.0034s0250
N
0.705
PGSC0003DMG400002911
Solanum tuberosum
PGSC0003DMG400002911
N
0.705
Traes_4AL_A494372EB
Triticum aestivum
Traes_4AL_A494372EB
N
0.705
Solyc12g009640.1
Solanum lycopersicum
Solyc12g009640.1
N
0.705
mgf010516m
Mimulus guttatus
mgf010516m
N
0.705
Traes_4BS_5B1737D7C
Triticum aestivum
Traes_4BS_5B1737D7C
N
0.705
Bo4g137780
Brassica oleracea
Bo4g137780
N
0.705
Solyc10g080090.1
Solanum lycopersicum
Solyc10g080090.1
N
0.705
Si000431m.g
Setaria italica
Si000431m.g
N
0.705
Traes_4DS_9C5CECE46
Triticum aestivum
Traes_4DS_9C5CECE46
N
0.705
MDP0000197332
Malus domestica
MDP0000197332
N
0.705
PGSC0003DMG400023690
Solanum tuberosum
PGSC0003DMG400023690
N
0.705
POPTR_0018s12680
Populus trichocarpa
POPTR_0018s12680
N
0.705
POPTR_0018s12690
Populus trichocarpa
POPTR_0018s12690
N
0.705
MLOC_66012
Hordeum vulgare
MLOC_66012
N
0.705