fgenesh1_pm.C_scaffold_5000603 (Arabidopsis lyrata)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 fgenesh1_pm.C_scaffold_5000603 T026474_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_5000603 BED ZF 28 79

Links

Other BED ZF family TFs
Other Arabidopsis lyrata TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.977
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.977
Bostr.0556s0643 Boechera stricta Bostr.0556s0643 N 0.930
HAT Arabidopsis thaliana AT3G42170 N 0.930
Bo4g137780 Brassica oleracea Bo4g137780 N 0.909
Thhalv10002435m.g Eutrema salsugineum Thhalv10002435m.g N 0.886
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.864
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.864
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.864
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.864
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.864
MDP0000394762 Malus domestica MDP0000394762 N 0.864
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.860
POPTR_0018s12680 Populus trichocarpa POPTR_0018s12680 N 0.841
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.841
PK27100.1 Cannabis sativa PK27100.1 N 0.841
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.841
mgf025287m Mimulus guttatus mgf025287m N 0.841
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.841
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.841
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.841
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.837
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.818
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.818
TCM_038144 Theobroma cacao TCM_038144 N 0.818
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.818
MDP0000197332 Malus domestica MDP0000197332 N 0.818
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.818
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.818
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.818
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.818
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.818
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.795
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.795
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.773
Bo6g018310 Brassica oleracea Bo6g018310 N 0.773
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.762
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.750
OB08G27850 Oryza brachyantha OB08G27850 N 0.750
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.750
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.750
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.727
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.727
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.727
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.727
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.727
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.727
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.727
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.727
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.727
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.727
OB08G27840 Oryza brachyantha OB08G27840 N 0.727
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.727
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.727
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.727
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.727
Bo4g107870 Brassica oleracea Bo4g107870 N 0.727
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.727
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.727
GLYMA16G32921 Glycine max GLYMA16G32921 N 0.727
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.727
Thhalv10022530m.g Eutrema salsugineum Thhalv10022530m.g N 0.705
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.705
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.705
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.705
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.705
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.705
Si000431m.g Setaria italica Si000431m.g N 0.705
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.705
GLYMA09G28061 Glycine max GLYMA09G28061 N 0.705
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.705
Si034159m.g Setaria italica Si034159m.g N 0.705
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.705
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.705
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.705
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.705
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.705
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.705