PGSC0003DMG400002911 (Solanum tuberosum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 PGSC0003DMG400002911 T027237_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400007541 BED ZF 226 277

Links

Other BED ZF family TFs
Other Solanum tuberosum TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA009862 Oryza indica BGIOSGA009862 N 0.705
BGIOSGA018468 Oryza indica BGIOSGA018468 N 0.705
BGIOSGA020445 Oryza indica BGIOSGA020445 N 0.705
Bo4g107870 Brassica oleracea Bo4g107870 N 0.705
Bo4g137780 Brassica oleracea Bo4g137780 N 0.818
Bostr.0556s0643 Boechera stricta Bostr.0556s0643 N 0.727
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.705
BRADI1G09660 Brachypodium distachyon BRADI1G09660 N 0.705
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.727
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.818
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.727
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.818
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.727
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.795
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.909
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 0.705
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.864
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.909
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.773
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.818
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.750
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.909
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.909
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.909
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.909
GLYMA16G32921 Glycine max GLYMA16G32921 N 0.705
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.886
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.818
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.841
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.841
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.727
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.705
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.773
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.773
HAT Arabidopsis thaliana AT3G42170 N 0.727
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.773
MDP0000197332 Malus domestica MDP0000197332 N 0.886
MDP0000394762 Malus domestica MDP0000394762 N 0.932
mgf025287m Mimulus guttatus mgf025287m N 0.909
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.727
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.773
OB03G40190 Oryza brachyantha OB03G40190 N 0.705
OB08G27840 Oryza brachyantha OB08G27840 N 0.750
OB08G27850 Oryza brachyantha OB08G27850 N 0.750
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.909
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N 0.705
ORGLA03G0300400 Oryza glaberrima ORGLA03G0300400 N 0.705
ORGLA05G0072400 Oryza glaberrima ORGLA05G0072400 N 0.705
ORGLA05G0236800 Oryza glaberrima ORGLA05G0236800 N 0.705
ORGLA05G0237000 Oryza glaberrima ORGLA05G0237000 N 0.705
OS03G0733400 Oryza sativa OS03G0733400 N 0.705
OS05G0583200 Oryza sativa OS05G0583200 N 0.705
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.727
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.750
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.750
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.773
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.773
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.750
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.750
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.932
PK27100.1 Cannabis sativa PK27100.1 N 0.909
Pm013703 Prunus mume Pm013703 N 0.750
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.795
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.795
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.860
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.837
POPTR_0018s12680 Populus trichocarpa POPTR_0018s12680 N 0.818
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.909
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.886
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.750
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.909
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.773
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.795
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.795
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.750
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.773
Si000431m.g Setaria italica Si000431m.g N 0.750
Si034159m.g Setaria italica Si034159m.g N 0.773
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.750
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.932
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.977
TCM_027266 Theobroma cacao TCM_027266 N 0.727
TCM_038144 Theobroma cacao TCM_038144 N 0.864
Thhalv10002435m.g Eutrema salsugineum Thhalv10002435m.g N 0.818
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.773
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.727
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.727
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.773
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.773
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.727
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.773
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.886