PGSC0003DMG400005619 (Solanum tuberosum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 PGSC0003DMG400005619 T027239_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400014322 BED ZF 43 85

Links

Other BED ZF family TFs
Other Solanum tuberosum TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc03g119830.2 Solanum lycopersicum Solyc03g119830.2 N 0.977
Gorai.007G008000 Gossypium raimondii Gorai.007G008000 N 0.930
TCM_012243 Theobroma cacao TCM_012243 N 0.930
cassava37498.valid.m1 Manihot esculenta cassava37498.valid.m1 N 0.907
PK14806.1 Cannabis sativa PK14806.1 N 0.907
cassava37499.valid.m1 Manihot esculenta cassava37499.valid.m1 N 0.907
cassava37500.valid.m1 Manihot esculenta cassava37500.valid.m1 N 0.907
Cagra.0909s0036 Capsella grandiflora Cagra.0909s0036 N 0.907
Bostr.7128s0463 Boechera stricta Bostr.7128s0463 N 0.907
AT1G18560 Arabidopsis thaliana AT1G18560 N 0.907
VIT_17s0000g04250 Vitis vinifera VIT_17s0000g04250 N 0.907
SapurV1A.3382s0020 Salix purpurea SapurV1A.3382s0020 N 0.907
Thhalv10006990m.g Eutrema salsugineum Thhalv10006990m.g N 0.907
Carubv10008481m.g Capsella rubella Carubv10008481m.g N 0.907
SapurV1A.0851s0040 Salix purpurea SapurV1A.0851s0040 N 0.907
POPTR_0012s05580 Populus trichocarpa POPTR_0012s05580 N 0.907
MDP0000637083 Malus domestica MDP0000637083 N 0.884
orange1.1g008805m.g Citrus sinensis orange1.1g008805m.g N 0.884
Ciclev10019100m.g Citrus clementina Ciclev10019100m.g N 0.884
LjSGA_062426.1 Lotus japonicus LjSGA_062426.1 N 0.884
Cucsa.090680 Cucumis sativus Cucsa.090680 N 0.884
GLYMA17G13141 Glycine max GLYMA17G13141 N 0.884
GLYMA05G07875 Glycine max GLYMA05G07875 N 0.884
Pm030213 Prunus mume Pm030213 N 0.884
PRUPE_ppa002398mg Prunus persica PRUPE_ppa002398mg N 0.884
gene26197-v1.0-hybrid Fragaria vesca gene26197-v1.0-hybrid N 0.860
MDP0000155004 Malus domestica MDP0000155004 N 0.860
PDK_20s1489551g002 Phoenix dactylifera PDK_20s1489551g002 N 0.837
Eucgr.B00689 Eucalyptus grandis Eucgr.B00689 N 0.837
Aquca_002_01079 Aquilegia coerulea Aquca_002_01079 N 0.837
AMTR_s00024p00250640 Amborella trichopoda AMTR_s00024p00250640 N 0.814
Bo5g083750 Brassica oleracea Bo5g083750 N 0.814
Bo8g104310 Brassica oleracea Bo8g104310 N 0.814
BRADI2G00992 Brachypodium distachyon BRADI2G00992 N 0.721