PGSC0003DMG400019816 (Solanum tuberosum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 PGSC0003DMG400019816 T027242_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400051036 BED ZF 25 81

Links

Other BED ZF family TFs
Other Solanum tuberosum TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 1.000
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.909
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.909
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.909
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.909
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.909
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.909
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.864
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.864
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.841
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.841
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.818
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.818
mgf025287m Mimulus guttatus mgf025287m N 0.818
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.818
TCM_027266 Theobroma cacao TCM_027266 N 0.818
PK27100.1 Cannabis sativa PK27100.1 N 0.818
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.818
Pm013703 Prunus mume Pm013703 N 0.818
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 0.818
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.818
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N 0.818
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.795
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.795
TCM_038144 Theobroma cacao TCM_038144 N 0.795
MDP0000394762 Malus domestica MDP0000394762 N 0.795
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.795
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.795
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.795
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.795
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.795
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.795
Bo4g107870 Brassica oleracea Bo4g107870 N 0.795
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.773
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.773
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.773
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.773
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.773
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.773
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.773
PK28412.1 Cannabis sativa PK28412.1 N 0.773
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.773
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.773
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.773
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.767
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.750
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.750
MDP0000197332 Malus domestica MDP0000197332 N 0.750
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.750
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.750
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.750
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.750
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.750
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.750
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.750
GLYMA07G03280 Glycine max GLYMA07G03280 N 0.750
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.750
Si000431m.g Setaria italica Si000431m.g N 0.750
OB08G27850 Oryza brachyantha OB08G27850 N 0.750
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.750
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.750
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.750
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.738
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.727
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.727
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.727
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.727
Bo6g067130 Brassica oleracea Bo6g067130 N 0.727
Thhalv10022530m.g Eutrema salsugineum Thhalv10022530m.g N 0.727
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.727
mgf010516m Mimulus guttatus mgf010516m N 0.727
Si000761m.g Setaria italica Si000761m.g N 0.727
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.727
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.727
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.727
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.727
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.727
Si034159m.g Setaria italica Si034159m.g N 0.727
OB08G27840 Oryza brachyantha OB08G27840 N 0.727
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.721
GLYMA13G44351 Glycine max GLYMA13G44351 N 0.705
Bo4g137780 Brassica oleracea Bo4g137780 N 0.705
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N 0.705
POPTR_0018s12680 Populus trichocarpa POPTR_0018s12680 N 0.705
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.705
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.705
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.705