POPTR_0018s12680 (Populus trichocarpa)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 POPTR_0018s12680 T027382_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s12680.1 BED ZF 77 128

Links

Other BED ZF family TFs
Other Populus trichocarpa TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.907
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.860
mgf025287m Mimulus guttatus mgf025287m N 0.841
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.841
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.841
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.841
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.841
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.841
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.841
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.841
PK27100.1 Cannabis sativa PK27100.1 N 0.841
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.841
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.841
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.841
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.818
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.818
MDP0000394762 Malus domestica MDP0000394762 N 0.818
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.818
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.818
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.818
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.795
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.795
Bo4g137780 Brassica oleracea Bo4g137780 N 0.795
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.795
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.795
TCM_038144 Theobroma cacao TCM_038144 N 0.795
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.795
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.795
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.795
Bostr.0556s0643 Boechera stricta Bostr.0556s0643 N 0.791
HAT Arabidopsis thaliana AT3G42170 N 0.791
Thhalv10002435m.g Eutrema salsugineum Thhalv10002435m.g N 0.773
MDP0000197332 Malus domestica MDP0000197332 N 0.773
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.750
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.750
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.727
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.727
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.727
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.727
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.727
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.727
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.727
gene31106-v1.0-hybrid Fragaria vesca gene31106-v1.0-hybrid N 0.721
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.705
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.705
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.705
Bo4g107870 Brassica oleracea Bo4g107870 N 0.705
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.705
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.705
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.705
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.705