TCM_004927 (Theobroma cacao)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 TCM_004927 T027745_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
EOX95420 BED ZF 15 62
EOX95420 BED ZF 139 186
EOX95421 BED ZF 15 62
EOX95421 BED ZF 139 186
EOX95422 BED ZF 15 62
EOX95422 BED ZF 139 186
EOX95423 BED ZF 15 62
EOX95423 BED ZF 139 186
EOX95424 BED ZF 15 62
EOX95424 BED ZF 139 186
EOX95425 BED ZF 11 58
EOX95425 BED ZF 135 182
EOX95426 BED ZF 15 62
EOX95426 BED ZF 139 186

Links

Other BED ZF family TFs
Other Theobroma cacao TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29889.m003394 Ricinus communis 29889.m003394 N 0.855
Aquca_029_00055 Aquilegia coerulea Aquca_029_00055 N 0.869
AT3G17450 Arabidopsis thaliana AT3G17450 N 0.845
Bo00763s120 Brassica oleracea Bo00763s120 N 0.840
Bostr.19424s0919 Boechera stricta Bostr.19424s0919 N 0.869
Cagra.4396s0051 Capsella grandiflora Cagra.4396s0051 N 0.869
Carubv10013083m.g Capsella rubella Carubv10013083m.g N 0.869
cassava36089.valid.m1 Manihot esculenta cassava36089.valid.m1 N 0.952
Ciclev10024195m.g Citrus clementina Ciclev10024195m.g N 0.988
Cucsa.252180 Cucumis sativus Cucsa.252180 N 0.833
Eucgr.B02527 Eucalyptus grandis Eucgr.B02527 N 0.976
evm.TU.supercontig_519.2 Carica papaya evm.TU.supercontig_519.2 N 0.964
gene22812-v1.0-hybrid Fragaria vesca gene22812-v1.0-hybrid N 0.821
GLYMA09G09291 Glycine max GLYMA09G09291 N 0.892
GLYMA15G21351 Glycine max GLYMA15G21351 N 0.869
Gorai.008G135400 Gossypium raimondii Gorai.008G135400 N 0.964
GSMUA_Achr3G12820_001 Musa acuminata GSMUA_Achr3G12820_001 N 0.869
LjT35D18.120.nc Lotus japonicus LjT35D18.120.nc N 0.869
MDP0000133479 Malus domestica MDP0000133479 N 0.845
MDP0000314867 Malus domestica MDP0000314867 N 0.845
orange1.1g044693m.g Citrus sinensis orange1.1g044693m.g N 0.988
PK21594.1 Cannabis sativa PK21594.1 N 0.845
Pm008491 Prunus mume Pm008491 N 0.845
POPTR_0002s18950 Populus trichocarpa POPTR_0002s18950 N 0.952
POPTR_0014s10940 Populus trichocarpa POPTR_0014s10940 N 0.976
PRUPE_ppa001126mg Prunus persica PRUPE_ppa001126mg N 0.845
SapurV1A.0014s0420 Salix purpurea SapurV1A.0014s0420 N 0.964
SapurV1A.0294s0300 Salix purpurea SapurV1A.0294s0300 N 0.976
TCM_021492 Theobroma cacao TCM_021492 N 0.833
Thhalv10020031m.g Eutrema salsugineum Thhalv10020031m.g N 0.869
VIT_05s0020g00790 Vitis vinifera VIT_05s0020g00790 N 0.904