VIT_12s0142g00390 (Vitis vinifera)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 VIT_12s0142g00390 T027888_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_12s0142g00390.t01 BED ZF 138 189

Links

Other BED ZF family TFs
Other Vitis vinifera TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.K01194 Eucalyptus grandis Eucgr.K01194 N 0.977
PGSC0003DMG400021240 Solanum tuberosum PGSC0003DMG400021240 N 0.955
Solyc10g007810.2 Solanum lycopersicum Solyc10g007810.2 N 0.955
cassava35563.valid.m1 Manihot esculenta cassava35563.valid.m1 N 0.955
TCM_001836 Theobroma cacao TCM_001836 N 0.953
Gorai.012G042700 Gossypium raimondii Gorai.012G042700 N 0.953
cassava21091.m1 Manihot esculenta cassava21091.m1 N 0.930
Cucsa.185330 Cucumis sativus Cucsa.185330 N 0.909
GLYMA08G42321 Glycine max GLYMA08G42321 N 0.909
GLYMA18G12556 Glycine max GLYMA18G12556 N 0.909
PK13949.1 Cannabis sativa PK13949.1 N 0.907
mgf000829m Mimulus guttatus mgf000829m N 0.886
Carubv10022346m.g Capsella rubella Carubv10022346m.g N 0.857
Bostr.10273s0360 Boechera stricta Bostr.10273s0360 N 0.857
Cagra.10840s0006 Capsella grandiflora Cagra.10840s0006 N 0.857
gene24495-v1.0-hybrid Fragaria vesca gene24495-v1.0-hybrid N 0.833
PRUPE_ppa002590mg Prunus persica PRUPE_ppa002590mg N 0.833
Pm014562 Prunus mume Pm014562 N 0.833
Aquca_039_00001 Aquilegia coerulea Aquca_039_00001 N 0.814
Thhalv10018229m.g Eutrema salsugineum Thhalv10018229m.g N 0.773
Bo6g110620 Brassica oleracea Bo6g110620 N 0.762
Thhalv10020233m.g Eutrema salsugineum Thhalv10020233m.g N 0.727
Carubv10013145m.g Capsella rubella Carubv10013145m.g N 0.727
Bo1g129970 Brassica oleracea Bo1g129970 N 0.727
Aquca_102_00001 Aquilegia coerulea Aquca_102_00001 N 0.727
Bostr.28625s0227 Boechera stricta Bostr.28625s0227 N 0.727
Cagra.0007s0024 Capsella grandiflora Cagra.0007s0024 N 0.727
cassava7665.valid.m1 Manihot esculenta cassava7665.valid.m1 N 0.727
cassava7664.valid.m1 Manihot esculenta cassava7664.valid.m1 N 0.727