bed-3 (Caenorhabditis elegans)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 WBGene00009133 T027895_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
bed-3
M00587_2.00
Caenorhabditis elegans
TCGRGANY

RNTCYCGA
PBM
Narasimhan et al.(2015)
pTH9056
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00587_2.00 BED ZF 51 95

DNA Binding Domains

Protein ID Domain From To Sequence
F25H8.6 BED ZF 126 170

Links

Other BED ZF family TFs
Other Caenorhabditis elegans TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CRE29878 Caenorhabditis remanei CRE29878 I 1.000
CRE01489 Caenorhabditis remanei CRE01489 I 1.000
CJA17936 Caenorhabditis japonica CJA17936 I 1.000
CBG03458 Caenorhabditis briggsae CBG03458 I 1.000
CBN11928 Caenorhabditis brenneri CBN11928 I 0.977
CBN28223 Caenorhabditis brenneri CBN28223 I 0.977
ANCCEY_10600 Ancylostoma ceylanicum ANCCEY_10600 I 0.932
CGOC_0000021801 Cylicostephanus goldi CGOC_0000021801 I 0.932
OESDEN_02515 Oesophagostomum dentatum OESDEN_02515 I 0.932
NECAME_07822 Necator americanus NECAME_07822 I 0.932
ASIM_0001651901 Anisakis simplex ASIM_0001651901 I 0.909
ASU_08993 Ascaris suum ASU_08993 I 0.909
Hba_14997 Heterorhabditis bacteriophora Hba_14997 I 0.886
ALUE_0002184101 Ascaris lumbricoides ALUE_0002184101 I 0.886
scaffold140-EXSNAP2012.77 Pristionchus exspectatus scaffold140-EXSNAP2012.77 I 0.864
SMUV_0001051801 Syphacia muris SMUV_0001051801 I 0.864
EVEC_0000803501 Enterobius vermicularis EVEC_0000803501 I 0.864
PEQ_0001129601 Parascaris equorum PEQ_0001129601 I 0.826
LOAG_01923 Loa loa LOAG_01923 I 0.818
nDi.2.2.2.g02831 Dirofilaria immitis nDi.2.2.2.g02831 I 0.818
nLs.2.1.2.g03792 Litomosoides sigmodontis nLs.2.1.2.g03792 I 0.818
nOo.2.0.1.g00032 Onchocerca ochengi nOo.2.0.1.g00032 I 0.818
Bm3595 Brugia malayi Bm3595 I 0.818
L898_g15300 Steinernema monticolum L898_g15300 I 0.818
nAv.1.0.1.g03085 Acanthocheilonema viteae nAv.1.0.1.g03085 I 0.818
DME_0000322601 Dracunculus medinensis DME_0000322601 I 0.818
WBGene00241796 Onchocerca volvulus WBGene00241796 I 0.818
L596_g13737 Steinernema carpocapsae L596_g13737 I 0.818
WUBG_08027 Wuchereria bancrofti WUBG_08027 I 0.818
L893_g7390 Steinernema glaseri L893_g7390 I 0.818
L892_g25347 Steinernema scapterisci L892_g25347 I 0.818
L889_g10141 Steinernema feltiae L889_g10141 I 0.818
SPAL_0001677600 Strongyloides papillosus SPAL_0001677600 I 0.795
PTRK_0000487800 Parastrongyloides trichosuri PTRK_0000487800 I 0.795
SSTP_0001230300 Strongyloides stercoralis SSTP_0001230300 I 0.795
SVE_1688100 Strongyloides venezuelensis SVE_1688100 I 0.795
RSKR_0000579600 Rhabditophanes kr3021 RSKR_0000579600 I 0.795
GPLIN_000014500 Globodera pallida GPLIN_000014500 I 0.750
ANCDUO_22610 Ancylostoma duodenale ANCDUO_22610 I 0.730