Brh_R008630 (Buceros rhinoceros)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Brh_R008630 T027963_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZBED1
M02771_2.00
Homo sapiens
HTRTCGCGACATR

YATGTCGCGAYAD
SELEX
Jolma et al.(2013)
ZBED1_1
1.000 1.000
ZBED1
M04056_2.00
Homo sapiens
VTRTCGCGAYAT

ATRTCGCGAYAB
SELEX
Yin et al.(2017)
ZBED1_eDBD_HT-SELEX
1.000 1.000
ZBED1
M09776_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DREF_01
1.000 1.000
ZBED1
M04057_2.00
Homo sapiens
MTRTCGCGAYAK

MTRTCGCGAYAK
SELEX
Yin et al.(2017)
ZBED1_eDBD_Methyl-HT-SELEX
1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R008630 BED ZF 23 72

Links

Other BED ZF family TFs
Other Buceros rhinoceros TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R008132 Calypte anna Aan_R008132 I 1.000
Afo_R005396 Aptenodytes forsteri Afo_R005396 I 1.000
Cmyd_10021612 Chelonia mydas Cmyd_10021612 I 1.000
ENSAMEG00000018666 Ailuropoda melanoleuca ENSAMEG00000018666 I 1.000
ENSAPLG00000011428 Anas platyrhynchos ENSAPLG00000011428 I 1.000
ENSCSAG00000019527 Chlorocebus sabaeus ENSCSAG00000019527 I 1.000
ENSFALG00000015033 Ficedula albicollis ENSFALG00000015033 I 1.000
ENSGALG00000028601 Gallus gallus ENSGALG00000028601 I 1.000
ENSLACG00000011306 Latimeria chalumnae ENSLACG00000011306 I 0.955
ENSLOCG00000017415 Lepisosteus oculatus ENSLOCG00000017415 I 0.977
ENSNLEG00000018727 Nomascus leucogenys ENSNLEG00000018727 I 1.000
ENSOARG00000008137 Ovis aries ENSOARG00000008137 I 0.977
ENSONIG00000007347 Oreochromis niloticus ENSONIG00000007347 I 0.909
ENSP00000370620 Macaca fascicularis ENSP00000370620 I 1.000
ENSP00000370620-D1 Bos grunniens ENSP00000370620-D1 I 0.977
ENSPANG00000011132 Papio anubis ENSPANG00000011132 I 1.000
ENSPPYG00000020088 Pongo abelii ENSPPYG00000020088 I 1.000
ENSPSIG00000002047 Pelodiscus sinensis ENSPSIG00000002047 I 1.000
ENSSHAG00000012608 Sarcophilus harrisii ENSSHAG00000012608 I 1.000
Gfo_R009655 Geospiza fortis Gfo_R009655 I 1.000
Pvit_08935 Pogona vitticeps Pvit_08935 I 1.000
Tal_R000939 Tyto alba Tal_R000939 I 1.000
XP_002933665 Xenopus tropicalis XP_002933665 I 1.000
XP_002941050 Xenopus tropicalis XP_002941050 I 1.000
ZBED1 Oryctolagus cuniculus ENSOCUG00000023740 I 0.977
ZBED1 Bos taurus ENSBTAG00000024641 I 0.977
ZBED1 Dasypus novemcinctus ENSDNOG00000012869 I 1.000
ZBED1 Felis catus ENSFCAG00000012522 I 1.000
ZBED1 Homo sapiens ENSG00000214717 D 1.000
ZBED1 Gorilla gorilla ENSGGOG00000011706 I 1.000
ZBED1 Loxodonta africana ENSLAFG00000013332 I 1.000
ZBED1 Meleagris gallopavo ENSMGAG00000015483 I 1.000
ZBED1 Macaca mulatta ENSMMUG00000007514 I 1.000
ZBED1 Ornithorhynchus anatinus ENSOANG00000010515 I 1.000
ZBED1 Anolis carolinensis ENSACAG00000023513 I 1.000