CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm023575
(
Prunus mume
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
Pm023575
T028031_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm023575
BED ZF
10
53
DACWEHCILVDATKQKVRCNYCQREFSGGVYRMKFHLAQIKNKD
Links
Other
BED ZF
family TFs
Other
Prunus mume
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene32271-v1.0-hybrid
Fragaria vesca
gene32271-v1.0-hybrid
N
0.975
Solyc08g007470.1
Solanum lycopersicum
Solyc08g007470.1
N
0.950
MDP0000230416
Malus domestica
MDP0000230416
N
0.950
GLYMA01G42065
Glycine max
GLYMA01G42065
N
0.947
evm.TU.supercontig_29.102
Carica papaya
evm.TU.supercontig_29.102
N
0.925
TCM_016057
Theobroma cacao
TCM_016057
N
0.925
AMTR_s00061p00028660
Amborella trichopoda
AMTR_s00061p00028660
N
0.925
PGSC0003DMG401012482
Solanum tuberosum
PGSC0003DMG401012482
N
0.925
PDK_20s1631911g001
Phoenix dactylifera
PDK_20s1631911g001
N
0.900
GSMUA_Achr8G28860_001
Musa acuminata
GSMUA_Achr8G28860_001
N
0.900
30190.m011006
Ricinus communis
30190.m011006
N
0.829
PK14046.1
Cannabis sativa
PK14046.1
N
0.800