cassava37498.valid.m1 (Manihot esculenta)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 cassava37498.valid.m1 T028070_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava37498.valid.m1 BED ZF 71 113

Links

Other BED ZF family TFs
Other Manihot esculenta TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava37499.valid.m1 Manihot esculenta cassava37499.valid.m1 N 1.000
cassava37500.valid.m1 Manihot esculenta cassava37500.valid.m1 N 1.000
POPTR_0012s05580 Populus trichocarpa POPTR_0012s05580 N 0.977
Gorai.007G008000 Gossypium raimondii Gorai.007G008000 N 0.977
PK14806.1 Cannabis sativa PK14806.1 N 0.977
VIT_17s0000g04250 Vitis vinifera VIT_17s0000g04250 N 0.977
SapurV1A.3382s0020 Salix purpurea SapurV1A.3382s0020 N 0.977
SapurV1A.0851s0040 Salix purpurea SapurV1A.0851s0040 N 0.977
TCM_012243 Theobroma cacao TCM_012243 N 0.977
MDP0000637083 Malus domestica MDP0000637083 N 0.953
orange1.1g008805m.g Citrus sinensis orange1.1g008805m.g N 0.953
Ciclev10019100m.g Citrus clementina Ciclev10019100m.g N 0.953
Cucsa.090680 Cucumis sativus Cucsa.090680 N 0.953
PRUPE_ppa002398mg Prunus persica PRUPE_ppa002398mg N 0.953
Pm030213 Prunus mume Pm030213 N 0.953
Solyc03g119830.2 Solanum lycopersicum Solyc03g119830.2 N 0.930
gene26197-v1.0-hybrid Fragaria vesca gene26197-v1.0-hybrid N 0.930
MDP0000155004 Malus domestica MDP0000155004 N 0.930
PGSC0003DMG400005619 Solanum tuberosum PGSC0003DMG400005619 N 0.907
GLYMA05G07875 Glycine max GLYMA05G07875 N 0.907
Thhalv10006990m.g Eutrema salsugineum Thhalv10006990m.g N 0.907
LjSGA_062426.1 Lotus japonicus LjSGA_062426.1 N 0.907
GLYMA17G13141 Glycine max GLYMA17G13141 N 0.907
Eucgr.B00689 Eucalyptus grandis Eucgr.B00689 N 0.907
PDK_20s1489551g002 Phoenix dactylifera PDK_20s1489551g002 N 0.907
Bostr.7128s0463 Boechera stricta Bostr.7128s0463 N 0.907
Cagra.0909s0036 Capsella grandiflora Cagra.0909s0036 N 0.907
AT1G18560 Arabidopsis thaliana AT1G18560 N 0.907
Carubv10008481m.g Capsella rubella Carubv10008481m.g N 0.907
AMTR_s00024p00250640 Amborella trichopoda AMTR_s00024p00250640 N 0.884
Aquca_002_01079 Aquilegia coerulea Aquca_002_01079 N 0.860
Bo5g083750 Brassica oleracea Bo5g083750 N 0.814
Bo8g104310 Brassica oleracea Bo8g104310 N 0.814