Cagra.1725s0137 (Capsella grandiflora)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Cagra.1725s0137 T028209_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1725s0137.1.p BED ZF 50 102

Links

Other BED ZF family TFs
Other Capsella grandiflora TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 1.000
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.977
Bo4g107870 Brassica oleracea Bo4g107870 N 0.955
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.886
Bo6g067130 Brassica oleracea Bo6g067130 N 0.886
Thhalv10022530m.g Eutrema salsugineum Thhalv10022530m.g N 0.886
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.864
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.864
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.864
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.864
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.864
Pm013703 Prunus mume Pm013703 N 0.864
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.864
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.864
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.841
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.841
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.841
TCM_027266 Theobroma cacao TCM_027266 N 0.795
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.795
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.795
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.795
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.795
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.773
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N 0.773
PK27100.1 Cannabis sativa PK27100.1 N 0.773
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.773
MDP0000394762 Malus domestica MDP0000394762 N 0.773
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.773
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 0.773
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.773
mgf025287m Mimulus guttatus mgf025287m N 0.773
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.773
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.773
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.773
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.773
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.773
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.773
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.773
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.773
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.750
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.750
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.750
GLYMA07G03280 Glycine max GLYMA07G03280 N 0.750
OB08G27840 Oryza brachyantha OB08G27840 N 0.750
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.750
Si034159m.g Setaria italica Si034159m.g N 0.750
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.750
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.750
TCM_038144 Theobroma cacao TCM_038144 N 0.750
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.750
Si000431m.g Setaria italica Si000431m.g N 0.750
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.750
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.750
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.744
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.727
Bo8g066350 Brassica oleracea Bo8g066350 N 0.727
Thhalv10009614m.g Eutrema salsugineum Thhalv10009614m.g N 0.727
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.727
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.727
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.727
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.727
MDP0000197332 Malus domestica MDP0000197332 N 0.727
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.727
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.727
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.727
mgf010516m Mimulus guttatus mgf010516m N 0.727
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.727
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.727
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.727
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.727
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.727
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.727
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.727
OB08G27850 Oryza brachyantha OB08G27850 N 0.727
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.727
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.727
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.705
Bo4g137780 Brassica oleracea Bo4g137780 N 0.705
PK28412.1 Cannabis sativa PK28412.1 N 0.705
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.705
Si000761m.g Setaria italica Si000761m.g N 0.705
Si000401m.g Setaria italica Si000401m.g N 0.705
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.705
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.705
GLYMA13G44351 Glycine max GLYMA13G44351 N 0.705