Carubv10008481m.g (Capsella rubella)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Carubv10008481m.g T028219_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008481m BED ZF 55 97

Links

Other BED ZF family TFs
Other Capsella rubella TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00024p00250640 Amborella trichopoda AMTR_s00024p00250640 N 0.791
Aquca_002_01079 Aquilegia coerulea Aquca_002_01079 N 0.837
AT1G18560 Arabidopsis thaliana AT1G18560 N 0.977
Bo5g083750 Brassica oleracea Bo5g083750 N 0.884
Bo8g104310 Brassica oleracea Bo8g104310 N 0.860
Bostr.7128s0463 Boechera stricta Bostr.7128s0463 N 0.977
Cagra.0909s0036 Capsella grandiflora Cagra.0909s0036 N 1.000
cassava37498.valid.m1 Manihot esculenta cassava37498.valid.m1 N 0.907
cassava37499.valid.m1 Manihot esculenta cassava37499.valid.m1 N 0.907
cassava37500.valid.m1 Manihot esculenta cassava37500.valid.m1 N 0.907
Ciclev10019100m.g Citrus clementina Ciclev10019100m.g N 0.907
Cucsa.090680 Cucumis sativus Cucsa.090680 N 0.860
Eucgr.B00689 Eucalyptus grandis Eucgr.B00689 N 0.860
gene26197-v1.0-hybrid Fragaria vesca gene26197-v1.0-hybrid N 0.860
GLYMA05G07875 Glycine max GLYMA05G07875 N 0.907
GLYMA17G13141 Glycine max GLYMA17G13141 N 0.907
Gorai.007G008000 Gossypium raimondii Gorai.007G008000 N 0.930
LjSGA_062426.1 Lotus japonicus LjSGA_062426.1 N 0.907
MDP0000155004 Malus domestica MDP0000155004 N 0.860
MDP0000637083 Malus domestica MDP0000637083 N 0.860
orange1.1g008805m.g Citrus sinensis orange1.1g008805m.g N 0.907
PDK_20s1489551g002 Phoenix dactylifera PDK_20s1489551g002 N 0.814
PGSC0003DMG400005619 Solanum tuberosum PGSC0003DMG400005619 N 0.907
PK14806.1 Cannabis sativa PK14806.1 N 0.884
Pm030213 Prunus mume Pm030213 N 0.860
POPTR_0012s05580 Populus trichocarpa POPTR_0012s05580 N 0.884
PRUPE_ppa002398mg Prunus persica PRUPE_ppa002398mg N 0.860
SapurV1A.0851s0040 Salix purpurea SapurV1A.0851s0040 N 0.884
SapurV1A.3382s0020 Salix purpurea SapurV1A.3382s0020 N 0.884
Solyc03g119830.2 Solanum lycopersicum Solyc03g119830.2 N 0.930
TCM_012243 Theobroma cacao TCM_012243 N 0.930
Thhalv10006990m.g Eutrema salsugineum Thhalv10006990m.g N 0.977
VIT_17s0000g04250 Vitis vinifera VIT_17s0000g04250 N 0.884