CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_3.39
(
Carica papaya
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
evm.TU.supercontig_3.39
T028266_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_3.39
BED ZF
12
57
DVCWEYAEKLDGNKVRCKFCLRVLNGGISRLKHHLSRLPSKGVNPC
Links
Other
BED ZF
family TFs
Other
Carica papaya
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400009096
Solanum tuberosum
PGSC0003DMG400009096
N
0.974
Solyc03g007510.2
Solanum lycopersicum
Solyc03g007510.2
N
0.949
VIT_16s0050g02440
Vitis vinifera
VIT_16s0050g02440
N
0.875
TCM_015328
Theobroma cacao
TCM_015328
N
0.875
PRUPE_ppa002763mg
Prunus persica
PRUPE_ppa002763mg
N
0.850
30169.m006547
Ricinus communis
30169.m006547
N
0.850
GLYMA06G12991
Glycine max
GLYMA06G12991
N
0.850
PK04121.1
Cannabis sativa
PK04121.1
N
0.850
Carubv10019846m.g
Capsella rubella
Carubv10019846m.g
N
0.842
AT1G79740
Arabidopsis thaliana
AT1G79740
N
0.842
Cla004997
Citrullus lanatus
Cla004997
N
0.825
Cucsa.201910
Cucumis sativus
Cucsa.201910
N
0.825
Pavir.Ea00125
Panicum virgatum
Pavir.Ea00125
N
0.821
Pavir.Eb00173
Panicum virgatum
Pavir.Eb00173
N
0.800
Sb03g001335
Sorghum bicolor
Sb03g001335
N
0.800
gene13122-v1.0-hybrid
Fragaria vesca
gene13122-v1.0-hybrid
N
0.800
BGIOSGA002103
Oryza indica
BGIOSGA002103
N
0.795
OB01G17890
Oryza brachyantha
OB01G17890
N
0.795
OS01G0222700
Oryza sativa
OS01G0222700
N
0.795
ORGLA01G0068100
Oryza glaberrima
ORGLA01G0068100
N
0.795
PDK_20s1555001g001
Phoenix dactylifera
PDK_20s1555001g001
N
0.793
MDP0000411586
Malus domestica
MDP0000411586
N
0.775
MDP0000520527
Malus domestica
MDP0000520527
N
0.775
BRADI2G07297
Brachypodium distachyon
BRADI2G07297
N
0.769
GSMUA_Achr8G19830_001
Musa acuminata
GSMUA_Achr8G19830_001
N
0.750
TRIUR3_07707
Triticum urartu
TRIUR3_07707
N
0.744
MLOC_67613
Hordeum vulgare
MLOC_67613
N
0.744
Traes_3DS_5523A155D
Triticum aestivum
Traes_3DS_5523A155D
N
0.744