CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
evm.TU.supercontig_519.2
(
Carica papaya
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
evm.TU.supercontig_519.2
T028267_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_519.2
BED ZF
11
58
DPGWEHGVAQDERKKKVKCNYCGKIVSGGIFRLKQHLARISGEVTHCE
evm.model.supercontig_519.2
BED ZF
135
182
DPGWEHCVPQDEKKKRVKCNYCEKIISGGINRFKQHLARIPGEVACCE
Links
Other
BED ZF
family TFs
Other
Carica papaya
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_004927
Theobroma cacao
TCM_004927
N
0.964
Ciclev10024195m.g
Citrus clementina
Ciclev10024195m.g
N
0.952
orange1.1g044693m.g
Citrus sinensis
orange1.1g044693m.g
N
0.952
Eucgr.B02527
Eucalyptus grandis
Eucgr.B02527
N
0.940
Gorai.008G135400
Gossypium raimondii
Gorai.008G135400
N
0.940
POPTR_0014s10940
Populus trichocarpa
POPTR_0014s10940
N
0.940
SapurV1A.0294s0300
Salix purpurea
SapurV1A.0294s0300
N
0.940
SapurV1A.0014s0420
Salix purpurea
SapurV1A.0014s0420
N
0.928
cassava36089.valid.m1
Manihot esculenta
cassava36089.valid.m1
N
0.917
POPTR_0002s18950
Populus trichocarpa
POPTR_0002s18950
N
0.917
VIT_05s0020g00790
Vitis vinifera
VIT_05s0020g00790
N
0.880
Bostr.19424s0919
Boechera stricta
Bostr.19424s0919
N
0.869
Carubv10013083m.g
Capsella rubella
Carubv10013083m.g
N
0.869
Cagra.4396s0051
Capsella grandiflora
Cagra.4396s0051
N
0.869
Thhalv10020031m.g
Eutrema salsugineum
Thhalv10020031m.g
N
0.869
GSMUA_Achr3G12820_001
Musa acuminata
GSMUA_Achr3G12820_001
N
0.869
GLYMA09G09291
Glycine max
GLYMA09G09291
N
0.867
Aquca_029_00055
Aquilegia coerulea
Aquca_029_00055
N
0.857
TCM_021492
Theobroma cacao
TCM_021492
N
0.857
29889.m003394
Ricinus communis
29889.m003394
N
0.855
Bo00763s120
Brassica oleracea
Bo00763s120
N
0.852
LjT35D18.120.nc
Lotus japonicus
LjT35D18.120.nc
N
0.845
GLYMA15G21351
Glycine max
GLYMA15G21351
N
0.845
AT3G17450
Arabidopsis thaliana
AT3G17450
N
0.845
MDP0000314867
Malus domestica
MDP0000314867
N
0.845
MDP0000133479
Malus domestica
MDP0000133479
N
0.845
Cucsa.252180
Cucumis sativus
Cucsa.252180
N
0.833
Pm008491
Prunus mume
Pm008491
N
0.833
PRUPE_ppa001126mg
Prunus persica
PRUPE_ppa001126mg
N
0.833
PK21594.1
Cannabis sativa
PK21594.1
N
0.821
gene22812-v1.0-hybrid
Fragaria vesca
gene22812-v1.0-hybrid
N
0.821