gene22812-v1.0-hybrid (Fragaria vesca)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 gene22812-v1.0-hybrid T028295_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna22812.1-v1.0-hybrid BED ZF 8 55
mrna22812.1-v1.0-hybrid BED ZF 131 180

Links

Other BED ZF family TFs
Other Fragaria vesca TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000133479 Malus domestica MDP0000133479 N 0.976
MDP0000314867 Malus domestica MDP0000314867 N 0.976
Pm008491 Prunus mume Pm008491 N 0.952
PRUPE_ppa001126mg Prunus persica PRUPE_ppa001126mg N 0.952
Cucsa.252180 Cucumis sativus Cucsa.252180 N 0.940
PK21594.1 Cannabis sativa PK21594.1 N 0.893
Cagra.4396s0051 Capsella grandiflora Cagra.4396s0051 N 0.881
Bostr.19424s0919 Boechera stricta Bostr.19424s0919 N 0.881
VIT_05s0020g00790 Vitis vinifera VIT_05s0020g00790 N 0.881
Carubv10013083m.g Capsella rubella Carubv10013083m.g N 0.881
Thhalv10020031m.g Eutrema salsugineum Thhalv10020031m.g N 0.881
GSMUA_Achr3G12820_001 Musa acuminata GSMUA_Achr3G12820_001 N 0.869
GLYMA09G09291 Glycine max GLYMA09G09291 N 0.869
GLYMA15G21351 Glycine max GLYMA15G21351 N 0.869
AT3G17450 Arabidopsis thaliana AT3G17450 N 0.857
29889.m003394 Ricinus communis 29889.m003394 N 0.857
LjT35D18.120.nc Lotus japonicus LjT35D18.120.nc N 0.857
TCM_021492 Theobroma cacao TCM_021492 N 0.845
Bo00763s120 Brassica oleracea Bo00763s120 N 0.833
orange1.1g044693m.g Citrus sinensis orange1.1g044693m.g N 0.821
POPTR_0014s10940 Populus trichocarpa POPTR_0014s10940 N 0.821
TCM_004927 Theobroma cacao TCM_004927 N 0.821
SapurV1A.0294s0300 Salix purpurea SapurV1A.0294s0300 N 0.821
Ciclev10024195m.g Citrus clementina Ciclev10024195m.g N 0.821
cassava36089.valid.m1 Manihot esculenta cassava36089.valid.m1 N 0.821
evm.TU.supercontig_519.2 Carica papaya evm.TU.supercontig_519.2 N 0.821
Aquca_029_00055 Aquilegia coerulea Aquca_029_00055 N 0.810
Eucgr.B02527 Eucalyptus grandis Eucgr.B02527 N 0.810
POPTR_0002s18950 Populus trichocarpa POPTR_0002s18950 N 0.798
Gorai.008G135400 Gossypium raimondii Gorai.008G135400 N 0.798
SapurV1A.0014s0420 Salix purpurea SapurV1A.0014s0420 N 0.798