Gorai.008G135400 (Gossypium raimondii)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Gorai.008G135400 T028353_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G135400.1 BED ZF 15 62
Gorai.008G135400.1 BED ZF 139 186
Gorai.008G135400.2 BED ZF 15 62
Gorai.008G135400.2 BED ZF 139 186
Gorai.008G135400.3 BED ZF 15 62
Gorai.008G135400.3 BED ZF 139 186

Links

Other BED ZF family TFs
Other Gossypium raimondii TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.B02527 Eucalyptus grandis Eucgr.B02527 N 0.964
TCM_004927 Theobroma cacao TCM_004927 N 0.964
Ciclev10024195m.g Citrus clementina Ciclev10024195m.g N 0.952
orange1.1g044693m.g Citrus sinensis orange1.1g044693m.g N 0.952
evm.TU.supercontig_519.2 Carica papaya evm.TU.supercontig_519.2 N 0.940
POPTR_0014s10940 Populus trichocarpa POPTR_0014s10940 N 0.940
SapurV1A.0294s0300 Salix purpurea SapurV1A.0294s0300 N 0.940
SapurV1A.0014s0420 Salix purpurea SapurV1A.0014s0420 N 0.928
POPTR_0002s18950 Populus trichocarpa POPTR_0002s18950 N 0.917
cassava36089.valid.m1 Manihot esculenta cassava36089.valid.m1 N 0.917
VIT_05s0020g00790 Vitis vinifera VIT_05s0020g00790 N 0.867
GLYMA09G09291 Glycine max GLYMA09G09291 N 0.855
29889.m003394 Ricinus communis 29889.m003394 N 0.855
GLYMA15G21351 Glycine max GLYMA15G21351 N 0.854
Carubv10013083m.g Capsella rubella Carubv10013083m.g N 0.845
Thhalv10020031m.g Eutrema salsugineum Thhalv10020031m.g N 0.845
Aquca_029_00055 Aquilegia coerulea Aquca_029_00055 N 0.845
Cagra.4396s0051 Capsella grandiflora Cagra.4396s0051 N 0.845
Bostr.19424s0919 Boechera stricta Bostr.19424s0919 N 0.845
GSMUA_Achr3G12820_001 Musa acuminata GSMUA_Achr3G12820_001 N 0.845
TCM_021492 Theobroma cacao TCM_021492 N 0.843
LjT35D18.120.nc Lotus japonicus LjT35D18.120.nc N 0.833
PK21594.1 Cannabis sativa PK21594.1 N 0.833
AT3G17450 Arabidopsis thaliana AT3G17450 N 0.831
PRUPE_ppa001126mg Prunus persica PRUPE_ppa001126mg N 0.821
MDP0000133479 Malus domestica MDP0000133479 N 0.821
Pm008491 Prunus mume Pm008491 N 0.821
MDP0000314867 Malus domestica MDP0000314867 N 0.821
Bo00763s120 Brassica oleracea Bo00763s120 N 0.815
Cucsa.252180 Cucumis sativus Cucsa.252180 N 0.810
gene22812-v1.0-hybrid Fragaria vesca gene22812-v1.0-hybrid N 0.798