CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000314867
(
Malus domestica
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
MDP0000314867
T028404_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000314867
BED ZF
8
55
DPGWDHGVAQDERKKKVKCNYCGKIVSGGIYRLKQHLARVSGEVTYCD
MDP0000314867
BED ZF
131
180
DPGWEHGVAQDEKKKKVKCNYCEKIVSGGINRFKQHLARIPGEVAPCKHA
Links
Other
BED ZF
family TFs
Other
Malus domestica
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000133479
Malus domestica
MDP0000133479
N
1.000
gene22812-v1.0-hybrid
Fragaria vesca
gene22812-v1.0-hybrid
N
0.976
Pm008491
Prunus mume
Pm008491
N
0.964
Cucsa.252180
Cucumis sativus
Cucsa.252180
N
0.964
PRUPE_ppa001126mg
Prunus persica
PRUPE_ppa001126mg
N
0.964
PK21594.1
Cannabis sativa
PK21594.1
N
0.917
Cagra.4396s0051
Capsella grandiflora
Cagra.4396s0051
N
0.905
Bostr.19424s0919
Boechera stricta
Bostr.19424s0919
N
0.905
VIT_05s0020g00790
Vitis vinifera
VIT_05s0020g00790
N
0.905
Carubv10013083m.g
Capsella rubella
Carubv10013083m.g
N
0.905
Thhalv10020031m.g
Eutrema salsugineum
Thhalv10020031m.g
N
0.905
GSMUA_Achr3G12820_001
Musa acuminata
GSMUA_Achr3G12820_001
N
0.893
GLYMA15G21351
Glycine max
GLYMA15G21351
N
0.893
GLYMA09G09291
Glycine max
GLYMA09G09291
N
0.893
AT3G17450
Arabidopsis thaliana
AT3G17450
N
0.881
29889.m003394
Ricinus communis
29889.m003394
N
0.881
LjT35D18.120.nc
Lotus japonicus
LjT35D18.120.nc
N
0.881
TCM_021492
Theobroma cacao
TCM_021492
N
0.869
Bo00763s120
Brassica oleracea
Bo00763s120
N
0.857
orange1.1g044693m.g
Citrus sinensis
orange1.1g044693m.g
N
0.845
POPTR_0014s10940
Populus trichocarpa
POPTR_0014s10940
N
0.845
TCM_004927
Theobroma cacao
TCM_004927
N
0.845
SapurV1A.0294s0300
Salix purpurea
SapurV1A.0294s0300
N
0.845
Ciclev10024195m.g
Citrus clementina
Ciclev10024195m.g
N
0.845
cassava36089.valid.m1
Manihot esculenta
cassava36089.valid.m1
N
0.845
evm.TU.supercontig_519.2
Carica papaya
evm.TU.supercontig_519.2
N
0.845
Aquca_029_00055
Aquilegia coerulea
Aquca_029_00055
N
0.833
Eucgr.B02527
Eucalyptus grandis
Eucgr.B02527
N
0.833
POPTR_0002s18950
Populus trichocarpa
POPTR_0002s18950
N
0.821
Gorai.008G135400
Gossypium raimondii
Gorai.008G135400
N
0.821
SapurV1A.0014s0420
Salix purpurea
SapurV1A.0014s0420
N
0.821