orange1.1g008805m.g (Citrus sinensis)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 orange1.1g008805m.g T028424_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g008805m BED ZF 74 116
orange1.1g008857m BED ZF 72 114
orange1.1g009265m BED ZF 59 101

Links

Other BED ZF family TFs
Other Citrus sinensis TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10019100m.g Citrus clementina Ciclev10019100m.g N 1.000
VIT_17s0000g04250 Vitis vinifera VIT_17s0000g04250 N 0.977
POPTR_0012s05580 Populus trichocarpa POPTR_0012s05580 N 0.977
SapurV1A.0851s0040 Salix purpurea SapurV1A.0851s0040 N 0.977
PK14806.1 Cannabis sativa PK14806.1 N 0.977
SapurV1A.3382s0020 Salix purpurea SapurV1A.3382s0020 N 0.977
Pm030213 Prunus mume Pm030213 N 0.953
cassava37498.valid.m1 Manihot esculenta cassava37498.valid.m1 N 0.953
cassava37500.valid.m1 Manihot esculenta cassava37500.valid.m1 N 0.953
MDP0000637083 Malus domestica MDP0000637083 N 0.953
LjSGA_062426.1 Lotus japonicus LjSGA_062426.1 N 0.953
gene26197-v1.0-hybrid Fragaria vesca gene26197-v1.0-hybrid N 0.953
Cucsa.090680 Cucumis sativus Cucsa.090680 N 0.953
cassava37499.valid.m1 Manihot esculenta cassava37499.valid.m1 N 0.953
GLYMA05G07875 Glycine max GLYMA05G07875 N 0.953
GLYMA17G13141 Glycine max GLYMA17G13141 N 0.953
PRUPE_ppa002398mg Prunus persica PRUPE_ppa002398mg N 0.953
TCM_012243 Theobroma cacao TCM_012243 N 0.930
Gorai.007G008000 Gossypium raimondii Gorai.007G008000 N 0.930
MDP0000155004 Malus domestica MDP0000155004 N 0.930
Carubv10008481m.g Capsella rubella Carubv10008481m.g N 0.907
PDK_20s1489551g002 Phoenix dactylifera PDK_20s1489551g002 N 0.907
Cagra.0909s0036 Capsella grandiflora Cagra.0909s0036 N 0.907
Solyc03g119830.2 Solanum lycopersicum Solyc03g119830.2 N 0.884
Thhalv10006990m.g Eutrema salsugineum Thhalv10006990m.g N 0.884
AT1G18560 Arabidopsis thaliana AT1G18560 N 0.884
AMTR_s00024p00250640 Amborella trichopoda AMTR_s00024p00250640 N 0.884
PGSC0003DMG400005619 Solanum tuberosum PGSC0003DMG400005619 N 0.884
Bostr.7128s0463 Boechera stricta Bostr.7128s0463 N 0.884
Eucgr.B00689 Eucalyptus grandis Eucgr.B00689 N 0.860
Aquca_002_01079 Aquilegia coerulea Aquca_002_01079 N 0.814
Bo5g083750 Brassica oleracea Bo5g083750 N 0.791
Bo8g104310 Brassica oleracea Bo8g104310 N 0.791
BGIOSGA002631 Oryza indica BGIOSGA002631 N 0.721
Sb03g008300 Sorghum bicolor Sb03g008300 N 0.721
Si000514m.g Setaria italica Si000514m.g N 0.721
OS01G0111400 Oryza sativa OS01G0111400 N 0.721
ORGLA01G0007300 Oryza glaberrima ORGLA01G0007300 N 0.721
Pavir.Eb00818 Panicum virgatum Pavir.Eb00818 N 0.721
OB01G10840 Oryza brachyantha OB01G10840 N 0.721
Pavir.Ea00771 Panicum virgatum Pavir.Ea00771 N 0.721