orange1.1g044693m.g (Citrus sinensis)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 orange1.1g044693m.g T028428_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g044693m BED ZF 11 58
orange1.1g044693m BED ZF 135 182

Links

Other BED ZF family TFs
Other Citrus sinensis TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT3G17450 Arabidopsis thaliana AT3G17450 N 0.845
Cagra.4396s0051 Capsella grandiflora Cagra.4396s0051 N 0.869
Carubv10013083m.g Capsella rubella Carubv10013083m.g N 0.869
Ciclev10024195m.g Citrus clementina Ciclev10024195m.g N 1.000
Eucgr.B02527 Eucalyptus grandis Eucgr.B02527 N 0.964
evm.TU.supercontig_519.2 Carica papaya evm.TU.supercontig_519.2 N 0.952
gene22812-v1.0-hybrid Fragaria vesca gene22812-v1.0-hybrid N 0.821
Gorai.008G135400 Gossypium raimondii Gorai.008G135400 N 0.952
MDP0000133479 Malus domestica MDP0000133479 N 0.845
MDP0000314867 Malus domestica MDP0000314867 N 0.845
SapurV1A.0014s0420 Salix purpurea SapurV1A.0014s0420 N 0.976
SapurV1A.0294s0300 Salix purpurea SapurV1A.0294s0300 N 0.988
Thhalv10020031m.g Eutrema salsugineum Thhalv10020031m.g N 0.869
PK21594.1 Cannabis sativa PK21594.1 N 0.845
Bostr.19424s0919 Boechera stricta Bostr.19424s0919 N 0.869
Aquca_029_00055 Aquilegia coerulea Aquca_029_00055 N 0.869
Cucsa.252180 Cucumis sativus Cucsa.252180 N 0.833
Bo00763s120 Brassica oleracea Bo00763s120 N 0.840
GLYMA09G09291 Glycine max GLYMA09G09291 N 0.881
GLYMA15G21351 Glycine max GLYMA15G21351 N 0.869
GSMUA_Achr3G12820_001 Musa acuminata GSMUA_Achr3G12820_001 N 0.869
POPTR_0002s18950 Populus trichocarpa POPTR_0002s18950 N 0.964
POPTR_0014s10940 Populus trichocarpa POPTR_0014s10940 N 0.988
PRUPE_ppa001126mg Prunus persica PRUPE_ppa001126mg N 0.845
TCM_004927 Theobroma cacao TCM_004927 N 0.988
TCM_021492 Theobroma cacao TCM_021492 N 0.833
VIT_05s0020g00790 Vitis vinifera VIT_05s0020g00790 N 0.904
Pm008491 Prunus mume Pm008491 N 0.845
29889.m003394 Ricinus communis 29889.m003394 N 0.845
cassava36089.valid.m1 Manihot esculenta cassava36089.valid.m1 N 0.964
LjT35D18.120.nc Lotus japonicus LjT35D18.120.nc N 0.869