Pavir.Ea00125 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Ea00125 T028454_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea00125.1.p BED ZF 43 88

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Eb00173 Panicum virgatum Pavir.Eb00173 N 0.975
Sb03g001335 Sorghum bicolor Sb03g001335 N 0.975
ORGLA01G0068100 Oryza glaberrima ORGLA01G0068100 N 0.897
BGIOSGA002103 Oryza indica BGIOSGA002103 N 0.897
OB01G17890 Oryza brachyantha OB01G17890 N 0.897
OS01G0222700 Oryza sativa OS01G0222700 N 0.897
MLOC_67613 Hordeum vulgare MLOC_67613 N 0.872
TRIUR3_07707 Triticum urartu TRIUR3_07707 N 0.872
Traes_3DS_5523A155D Triticum aestivum Traes_3DS_5523A155D N 0.872
evm.TU.supercontig_3.39 Carica papaya evm.TU.supercontig_3.39 N 0.821
BRADI2G07297 Brachypodium distachyon BRADI2G07297 N 0.821
PGSC0003DMG400009096 Solanum tuberosum PGSC0003DMG400009096 N 0.795
GSMUA_Achr8G19830_001 Musa acuminata GSMUA_Achr8G19830_001 N 0.795
Solyc03g007510.2 Solanum lycopersicum Solyc03g007510.2 N 0.769
MDP0000520527 Malus domestica MDP0000520527 N 0.718
PRUPE_ppa002763mg Prunus persica PRUPE_ppa002763mg N 0.718
TCM_015328 Theobroma cacao TCM_015328 N 0.718
MDP0000411586 Malus domestica MDP0000411586 N 0.718
GLYMA06G12991 Glycine max GLYMA06G12991 N 0.718
VIT_16s0050g02440 Vitis vinifera VIT_16s0050g02440 N 0.718
PK04121.1 Cannabis sativa PK04121.1 N 0.700