Pavir.Ea02468 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Ea02468 T028460_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea02468.1.p BED ZF 84 139

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK27100.1 Cannabis sativa PK27100.1 N 0.750
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.727
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.727
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.727
mgf025287m Mimulus guttatus mgf025287m N 0.750
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.705
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.727
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.727
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.750
TRIUR3_10927 Triticum urartu TRIUR3_10927 N 0.727
Traes_6DS_FC6D9CA6B Triticum aestivum Traes_6DS_FC6D9CA6B N 0.727
TCM_038144 Theobroma cacao TCM_038144 N 0.727
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.909
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.841
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.841
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.909
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.909
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.841
Traes_6AS_2B943BE9C Triticum aestivum Traes_6AS_2B943BE9C N 0.727
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.750
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.727
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N 0.727
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.886
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.750
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.886
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.955
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.750
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.727
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.727
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.932
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.932
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.773
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.750
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.750
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.750
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.705
MDP0000197332 Malus domestica MDP0000197332 N 0.705
MDP0000394762 Malus domestica MDP0000394762 N 0.750
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.750
TCM_027266 Theobroma cacao TCM_027266 N 0.705
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.750
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.750
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.762
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.886
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.886
MLOC_42818 Hordeum vulgare MLOC_42818 N 0.727
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.841
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.909
OB03G40190 Oryza brachyantha OB03G40190 N 0.795
OB08G27840 Oryza brachyantha OB08G27840 N 0.886
GSMUA_Achr10G16260_001 Musa acuminata GSMUA_Achr10G16260_001 N 0.721
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.750
BGIOSGA018468 Oryza indica BGIOSGA018468 N 0.795
BGIOSGA020445 Oryza indica BGIOSGA020445 N 0.795
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.795
BRADI1G09660 Brachypodium distachyon BRADI1G09660 N 0.795
BRADI3G16050 Brachypodium distachyon BRADI3G16050 N 0.762
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.841
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.750
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.750
OB08G27850 Oryza brachyantha OB08G27850 N 0.886
ORGLA03G0300400 Oryza glaberrima ORGLA03G0300400 N 0.795
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.750
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.773
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.886
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.909
Si000431m.g Setaria italica Si000431m.g N 0.932
Si000761m.g Setaria italica Si000761m.g N 0.750
Si034159m.g Setaria italica Si034159m.g N 0.886
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.727
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.727
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.727
ORGLA05G0072400 Oryza glaberrima ORGLA05G0072400 N 0.795
ORGLA05G0236800 Oryza glaberrima ORGLA05G0236800 N 0.795
ORGLA05G0237000 Oryza glaberrima ORGLA05G0237000 N 0.841
OS03G0733400 Oryza sativa OS03G0733400 N 0.795
OS05G0583200 Oryza sativa OS05G0583200 N 0.841
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.727
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.727
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.750
BGIOSGA009862 Oryza indica BGIOSGA009862 N 0.795