CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Eb01402
(
Panicum virgatum
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
Pavir.Eb01402
T028471_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Eb01402.1.p
BED ZF
540
591
SIIWQHFTTETDSDGCTRACCNYCKRTFACSKTAGTSHLKRHITLGSCPVMK
Links
Other
BED ZF
family TFs
Other
Panicum virgatum
TFs
56 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si000761m.g
Setaria italica
Si000761m.g
N
0.955
Pavir.Ib03527
Panicum virgatum
Pavir.Ib03527
N
0.932
Sb09g016200
Sorghum bicolor
Sb09g016200
N
0.864
Traes_4AL_A494372EB
Triticum aestivum
Traes_4AL_A494372EB
N
0.773
Traes_4DS_9C5CECE46
Triticum aestivum
Traes_4DS_9C5CECE46
N
0.773
Si000431m.g
Setaria italica
Si000431m.g
N
0.773
TCM_027266
Theobroma cacao
TCM_027266
N
0.773
Gorai.010G137500
Gossypium raimondii
Gorai.010G137500
N
0.773
Pavir.J31170
Panicum virgatum
Pavir.J31170
N
0.773
Pavir.Eb00997
Panicum virgatum
Pavir.Eb00997
N
0.773
Pavir.Eb00995
Panicum virgatum
Pavir.Eb00995
N
0.773
gene15718-v1.0-hybrid
Fragaria vesca
gene15718-v1.0-hybrid
N
0.773
Traes_4BS_5B1737D7C
Triticum aestivum
Traes_4BS_5B1737D7C
N
0.773
MLOC_66012
Hordeum vulgare
MLOC_66012
N
0.773
BRADI3G40810
Brachypodium distachyon
BRADI3G40810
N
0.773
GSMUA_Achr8G29120_001
Musa acuminata
GSMUA_Achr8G29120_001
N
0.773
OB08G27850
Oryza brachyantha
OB08G27850
N
0.773
GSMUA_Achr3G16690_001
Musa acuminata
GSMUA_Achr3G16690_001
N
0.773
MLOC_75540
Hordeum vulgare
MLOC_75540
N
0.750
Traes_4DS_990D31BB1
Triticum aestivum
Traes_4DS_990D31BB1
N
0.750
Pavir.Ia00683
Panicum virgatum
Pavir.Ia00683
N
0.750
VIT_09s0002g07340
Vitis vinifera
VIT_09s0002g07340
N
0.750
Pavir.J05554
Panicum virgatum
Pavir.J05554
N
0.750
Traes_4BS_D5227ED8B
Triticum aestivum
Traes_4BS_D5227ED8B
N
0.750
Traes_4AL_54F25AA7C
Triticum aestivum
Traes_4AL_54F25AA7C
N
0.750
OB08G27840
Oryza brachyantha
OB08G27840
N
0.750
PRUPE_ppa001983mg
Prunus persica
PRUPE_ppa001983mg
N
0.750
Sb02g043380
Sorghum bicolor
Sb02g043380
N
0.750
Sb01g009090
Sorghum bicolor
Sb01g009090
N
0.750
Si034159m.g
Setaria italica
Si034159m.g
N
0.750
orange1.1g005485m.g
Citrus sinensis
orange1.1g005485m.g
N
0.727
orange1.1g002915m.g
Citrus sinensis
orange1.1g002915m.g
N
0.727
PK27100.1
Cannabis sativa
PK27100.1
N
0.727
Pavir.Ea02468
Panicum virgatum
Pavir.Ea02468
N
0.727
GLYMA13G22881
Glycine max
GLYMA13G22881
N
0.727
SapurV1A.0199s0250
Salix purpurea
SapurV1A.0199s0250
N
0.727
GLYMA13G22855
Glycine max
GLYMA13G22855
N
0.727
SapurV1A.0344s0280
Salix purpurea
SapurV1A.0344s0280
N
0.727
GLYMA17G11981
Glycine max
GLYMA17G11981
N
0.727
mgf025287m
Mimulus guttatus
mgf025287m
N
0.727
POPTR_0003s02610
Populus trichocarpa
POPTR_0003s02610
N
0.727
BRADI1G09650
Brachypodium distachyon
BRADI1G09650
N
0.727
POPTR_0001s20900
Populus trichocarpa
POPTR_0001s20900
N
0.727
Ciclev10007308m.g
Citrus clementina
Ciclev10007308m.g
N
0.727
cassava11655.m1
Manihot esculenta
cassava11655.m1
N
0.727
Eucgr.F03885
Eucalyptus grandis
Eucgr.F03885
N
0.727
Ciclev10025036m.g
Citrus clementina
Ciclev10025036m.g
N
0.727
Eucgr.C01383
Eucalyptus grandis
Eucgr.C01383
N
0.727
PGSC0003DMG400019816
Solanum tuberosum
PGSC0003DMG400019816
N
0.705
POPTR_0018s12690
Populus trichocarpa
POPTR_0018s12690
N
0.705
SapurV1A.0034s0250
Salix purpurea
SapurV1A.0034s0250
N
0.705
TCM_038144
Theobroma cacao
TCM_038144
N
0.705
Gorai.004G107300
Gossypium raimondii
Gorai.004G107300
N
0.705
VIT_11s0016g05750
Vitis vinifera
VIT_11s0016g05750
N
0.705
MDP0000394762
Malus domestica
MDP0000394762
N
0.705
Solyc03g116840.1
Solanum lycopersicum
Solyc03g116840.1
N
0.705