Pavir.J05554 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.J05554 T028537_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J05554.1.p BED ZF 113 167
Pavir.J05554.2.p BED ZF 113 167

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Si034159m.g Setaria italica Si034159m.g N 1.000
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 1.000
OB08G27840 Oryza brachyantha OB08G27840 N 0.977
OB08G27850 Oryza brachyantha OB08G27850 N 0.955
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.955
Si000431m.g Setaria italica Si000431m.g N 0.932
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.932
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.932
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.909
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.909
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.909
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.909
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.909
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.909
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.886
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.886
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.886
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.886
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.886
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.886
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.886
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.886
ORGLA05G0237000 Oryza glaberrima ORGLA05G0237000 N 0.864
OS05G0583200 Oryza sativa OS05G0583200 N 0.864
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.841
OB03G40190 Oryza brachyantha OB03G40190 N 0.795
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.795
ORGLA05G0072400 Oryza glaberrima ORGLA05G0072400 N 0.795
MDP0000394762 Malus domestica MDP0000394762 N 0.795
BGIOSGA020445 Oryza indica BGIOSGA020445 N 0.795
BGIOSGA009862 Oryza indica BGIOSGA009862 N 0.795
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.795
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.795
BGIOSGA018468 Oryza indica BGIOSGA018468 N 0.795
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.795
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.795
ORGLA03G0300400 Oryza glaberrima ORGLA03G0300400 N 0.795
BRADI1G09660 Brachypodium distachyon BRADI1G09660 N 0.795
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.795
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.795
OS03G0733400 Oryza sativa OS03G0733400 N 0.795
ORGLA05G0236800 Oryza glaberrima ORGLA05G0236800 N 0.795
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.795
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.786
mgf025287m Mimulus guttatus mgf025287m N 0.773
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.773
Traes_6AS_2B943BE9C Triticum aestivum Traes_6AS_2B943BE9C N 0.773
TRIUR3_10927 Triticum urartu TRIUR3_10927 N 0.773
Traes_6DS_FC6D9CA6B Triticum aestivum Traes_6DS_FC6D9CA6B N 0.773
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.773
MLOC_42818 Hordeum vulgare MLOC_42818 N 0.773
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.773
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.773
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.773
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.773
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.773
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.773
PK27100.1 Cannabis sativa PK27100.1 N 0.773
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.773
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.773
BRADI3G16050 Brachypodium distachyon BRADI3G16050 N 0.762
MDP0000197332 Malus domestica MDP0000197332 N 0.750
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.750
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.750
Si000761m.g Setaria italica Si000761m.g N 0.750
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N 0.750
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.750
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.750
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.750
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.750
Bo4g107870 Brassica oleracea Bo4g107870 N 0.750
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.750
TCM_038144 Theobroma cacao TCM_038144 N 0.750
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.750
GSMUA_Achr10G16260_001 Musa acuminata GSMUA_Achr10G16260_001 N 0.744
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.744
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.744
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.727
TCM_027266 Theobroma cacao TCM_027266 N 0.727
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.727
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.727
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.727
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.727
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.727
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.727
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.727
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.705
Thhalv10002435m.g Eutrema salsugineum Thhalv10002435m.g N 0.705
Bo4g137780 Brassica oleracea Bo4g137780 N 0.705
Bo6g067130 Brassica oleracea Bo6g067130 N 0.705
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.705
Pm013703 Prunus mume Pm013703 N 0.705
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.705
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.705
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.705
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.705
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.705