CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10022530m.g
(
Eutrema salsugineum
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
Thhalv10022530m.g
T028723_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10022530m
BED ZF
66
124
SMVWEHFTIETASPGSTKACCKHCRKSFAYITGQKLAGTSHLKRHIQLGICPMSQETHP
Links
Other
BED ZF
family TFs
Other
Eutrema salsugineum
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.20129s0513
Boechera stricta
Bostr.20129s0513
N
0.909
Cagra.1725s0137
Capsella grandiflora
Cagra.1725s0137
N
0.886
Bo6g067130
Brassica oleracea
Bo6g067130
N
0.886
Bo4g107870
Brassica oleracea
Bo4g107870
N
0.886
Carubv10019720m.g
Capsella rubella
Carubv10019720m.g
N
0.886
Eucgr.F03885
Eucalyptus grandis
Eucgr.F03885
N
0.773
Pm013703
Prunus mume
Pm013703
N
0.750
VIT_09s0002g07340
Vitis vinifera
VIT_09s0002g07340
N
0.750
SapurV1A.0344s0280
Salix purpurea
SapurV1A.0344s0280
N
0.750
SapurV1A.0199s0250
Salix purpurea
SapurV1A.0199s0250
N
0.750
PRUPE_ppa002495mg
Prunus persica
PRUPE_ppa002495mg
N
0.750
Eucgr.C01383
Eucalyptus grandis
Eucgr.C01383
N
0.750
cassava11655.m1
Manihot esculenta
cassava11655.m1
N
0.750
POPTR_0003s02610
Populus trichocarpa
POPTR_0003s02610
N
0.750
POPTR_0001s20900
Populus trichocarpa
POPTR_0001s20900
N
0.750
GLYMA13G22881
Glycine max
GLYMA13G22881
N
0.750
GLYMA13G22855
Glycine max
GLYMA13G22855
N
0.750
MDP0000394762
Malus domestica
MDP0000394762
N
0.727
GLYMA17G11981
Glycine max
GLYMA17G11981
N
0.727
PGSC0003DMG400019816
Solanum tuberosum
PGSC0003DMG400019816
N
0.727
SapurV1A.0197s0170
Salix purpurea
SapurV1A.0197s0170
N
0.727
mgf025287m
Mimulus guttatus
mgf025287m
N
0.727
gene15718-v1.0-hybrid
Fragaria vesca
gene15718-v1.0-hybrid
N
0.727
PK27100.1
Cannabis sativa
PK27100.1
N
0.727
orange1.1g002915m.g
Citrus sinensis
orange1.1g002915m.g
N
0.727
Solyc03g116840.1
Solanum lycopersicum
Solyc03g116840.1
N
0.727
gene31107-v1.0-hybrid
Fragaria vesca
gene31107-v1.0-hybrid
N
0.727
Ciclev10007308m.g
Citrus clementina
Ciclev10007308m.g
N
0.727
gene30791-v1.0-hybrid
Fragaria vesca
gene30791-v1.0-hybrid
N
0.727
mgf010516m
Mimulus guttatus
mgf010516m
N
0.727
Bostr.0556s0643
Boechera stricta
Bostr.0556s0643
N
0.721
POPTR_0004s12760
Populus trichocarpa
POPTR_0004s12760
N
0.721
HAT
Arabidopsis thaliana
AT3G42170
N
0.721
GSMUA_Achr3G02770_001
Musa acuminata
GSMUA_Achr3G02770_001
N
0.714
fgenesh1_pm.C_scaffold_5000603
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5000603
N
0.705
Bo8g066350
Brassica oleracea
Bo8g066350
N
0.705
Thhalv10009614m.g
Eutrema salsugineum
Thhalv10009614m.g
N
0.705
Carubv10008021m.g
Capsella rubella
Carubv10008021m.g
N
0.705
TCM_038144
Theobroma cacao
TCM_038144
N
0.705
Si000401m.g
Setaria italica
Si000401m.g
N
0.705
VIT_11s0016g05750
Vitis vinifera
VIT_11s0016g05750
N
0.705
Cagra.13611s0003
Capsella grandiflora
Cagra.13611s0003
N
0.705
PRUPE_ppa001983mg
Prunus persica
PRUPE_ppa001983mg
N
0.705
Gorai.004G107300
Gossypium raimondii
Gorai.004G107300
N
0.705