CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GPLIN_000014500
(
Globodera pallida
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
GPLIN_000014500
T029339_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bed-3
M00587_2.00
Caenorhabditis elegans
TCGRGANY
RNTCYCGA
PBM
Narasimhan et al.(2015)
pTH9056
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GPLIN_000014500
BED ZF
238
282
AEVWRFFTQRPTPEQAATCQICQKTIKATNSSTTGMIRHLRSCHQ
Links
Other
BED ZF
family TFs
Other
Globodera pallida
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy