L898_g15300 (Steinernema monticolum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 L898_g15300 T029448_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
bed-3
M00587_2.00
Caenorhabditis elegans
TCGRGANY

RNTCYCGA
PBM
Narasimhan et al.(2015)
pTH9056
0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L898_g15300.t1 BED ZF 291 335

Links

Other BED ZF family TFs
Other Steinernema monticolum TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AC194965.4_FG004 Zea mays AC194965.4_FG004 N 0.000
BGIOSGA018779 Oryza indica BGIOSGA018779 N 0.000
BRADI2G12590 Brachypodium distachyon BRADI2G12590 N 0.000
BRADI2G35057 Brachypodium distachyon BRADI2G35057 N 0.000
GATA23 Arabidopsis thaliana AT5G26930 N 0.000
GRMZM2G052616 Zea mays GRMZM2G052616 N 0.000
GRMZM2G104390 Zea mays GRMZM2G104390 N 0.000
LPERR01G13070 Leersia perrieri LPERR01G13070 N 0.000
OB01G24090 Oryza brachyantha OB01G24090 N 0.000
OB05G13650 Oryza brachyantha OB05G13650 N 0.000
OBART01G14380 Oryza barthii OBART01G14380 N 0.000
OBART05G03900 Oryza barthii OBART05G03900 N 0.000
OGLUM01G16180 Oryza glumaepatula OGLUM01G16180 N 0.000
OLONG_020882 Oryza longistaminata OLONG_020882 N 0.000
ONIVA04G04160 Oryza nivara ONIVA04G04160 N 0.000
OPUNC01G14080 Oryza punctata OPUNC01G14080 N 0.000
OPUNC05G03600 Oryza punctata OPUNC05G03600 N 0.000
ORGLA01G0118700 Oryza glaberrima ORGLA01G0118700 N 0.000
ORGLA05G0036200 Oryza glaberrima ORGLA05G0036200 N 0.000
ORUFI01G16060 Oryza rufipogon ORUFI01G16060 N 0.000
OS01G0343300 Oryza sativa OS01G0343300 N 0.000
OS05G0155400 Oryza sativa OS05G0155400 N 0.000
Pavir.Eb02364 Panicum virgatum Pavir.Eb02364 N 0.000
Pavir.J31164 Panicum virgatum Pavir.J31164 N 0.000
Pavir.J34225 Panicum virgatum Pavir.J34225 N 0.000
Sb03g013700 Sorghum bicolor Sb03g013700 N 0.000
Sb09g004315 Sorghum bicolor Sb09g004315 N 0.000
Si004417m.g Setaria italica Si004417m.g N 0.000
Si011269m.g Setaria italica Si011269m.g N 0.000