Al_scaffold_0006_3930 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Al_scaffold_0006_3930 T030455_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH14
M09785_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT4G00870_01 		0.914 0.979
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.840 0.812
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.840 0.812
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.840 0.792
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.840 0.792
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.840 0.792
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0006_3930 bHLH 247 294

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH14 Arabidopsis thaliana AT4G00870 D 0.914
GLYMA07G05740 Glycine max GLYMA07G05740 I 0.884
27964.m000356 Ricinus communis 27964.m000356 I 0.884
cassava29800.valid.m1 Manihot esculenta cassava29800.valid.m1 I 0.884
27964.m000352 Ricinus communis 27964.m000352 I 0.884
cassava32651.m1 Manihot esculenta cassava32651.m1 I 0.884
Bostr.7365s0026 Boechera stricta Bostr.7365s0026 I 0.884
mgf001993m Mimulus guttatus mgf001993m I 0.884
GLYMA16G02320 Glycine max GLYMA16G02320 I 0.884
VIT_15s0048g02820 Vitis vinifera VIT_15s0048g02820 I 0.884
PRUPE_ppa004680mg Prunus persica PRUPE_ppa004680mg I 0.884
POPTR_0002s17750 Populus trichocarpa POPTR_0002s17750 I 0.884
PGSC0003DMG400018332 Solanum tuberosum PGSC0003DMG400018332 I 0.884
Solyc01g096370.2 Solanum lycopersicum Solyc01g096370.2 I 0.884
TCM_005064 Theobroma cacao TCM_005064 I 0.884
Cagra.4923s0009 Capsella grandiflora Cagra.4923s0009 I 0.884
VIT_02s0025g02610 Vitis vinifera VIT_02s0025g02610 I 0.884
GSMUA_Achr1G18910_001 Musa acuminata GSMUA_Achr1G18910_001 I 0.884
Aquca_037_00261 Aquilegia coerulea Aquca_037_00261 I 0.884
MDP0000242554 Malus domestica MDP0000242554 I 0.884
MDP0000224302 Malus domestica MDP0000224302 I 0.884
Carubv10001082m.g Capsella rubella Carubv10001082m.g I 0.884
MDP0000729514 Malus domestica MDP0000729514 I 0.884
MDP0000859492 Malus domestica MDP0000859492 I 0.884
SapurV1A.0003s0670 Salix purpurea SapurV1A.0003s0670 I 0.884
orange1.1g046178m.g Citrus sinensis orange1.1g046178m.g I 0.884
MDP0000900024 Malus domestica MDP0000900024 I 0.884
Gorai.007G111800 Gossypium raimondii Gorai.007G111800 I 0.884
Gorai.008G128800 Gossypium raimondii Gorai.008G128800 I 0.884
Ciclev10019749m.g Citrus clementina Ciclev10019749m.g I 0.884
evm.TU.supercontig_141.19 Carica papaya evm.TU.supercontig_141.19 I 0.884
Eucgr.E00019 Eucalyptus grandis Eucgr.E00019 I 0.884
gene18651-v1.0-hybrid Fragaria vesca gene18651-v1.0-hybrid I 0.884
Gorai.004G149500 Gossypium raimondii Gorai.004G149500 I 0.884
Gorai.001G151700 Gossypium raimondii Gorai.001G151700 I 0.884
Ca_17603 Cicer arietinum Ca_17603 I 0.883
PGSC0003DMG400005528 Solanum tuberosum PGSC0003DMG400005528 I 0.871
PGSC0003DMG400012237 Solanum tuberosum PGSC0003DMG400012237 I 0.871
PGSC0003DMG400005860 Solanum tuberosum PGSC0003DMG400005860 I 0.871
Solyc08g008600.2 Solanum lycopersicum Solyc08g008600.2 I 0.871
gene01894-v1.0-hybrid Fragaria vesca gene01894-v1.0-hybrid I 0.871
Solyc08g083170.1 Solanum lycopersicum Solyc08g083170.1 I 0.871
Pm029399 Prunus mume Pm029399 I 0.871
PRUPE_ppa005343mg Prunus persica PRUPE_ppa005343mg I 0.871
Solyc10g009290.1 Solanum lycopersicum Solyc10g009290.1 I 0.871
MTR_8g024790 Medicago truncatula MTR_8g024790 I 0.871
MTR_8g024770 Medicago truncatula MTR_8g024770 I 0.871
MDP0000603546 Malus domestica MDP0000603546 I 0.864
Cla006802 Citrullus lanatus Cla006802 I 0.864
MDP0000160600 Malus domestica MDP0000160600 I 0.864
Cla006801 Citrullus lanatus Cla006801 I 0.864
PK23618.1 Cannabis sativa PK23618.1 I 0.864
Cucsa.120830 Cucumis sativus Cucsa.120830 I 0.864
Lus10005999.g Linum usitatissimum Lus10005999.g I 0.860
GSMUA_Achr10G07470_001 Musa acuminata GSMUA_Achr10G07470_001 I 0.860
Cla007989 Citrullus lanatus Cla007989 I 0.860
Eucgr.E01043 Eucalyptus grandis Eucgr.E01043 I 0.854
POPTR_0014s09950 Populus trichocarpa POPTR_0014s09950 I 0.852
SapurV1A.0162s0110 Salix purpurea SapurV1A.0162s0110 I 0.852
Si021549m.g Setaria italica Si021549m.g I 0.851
Pavir.Cb01851 Panicum virgatum Pavir.Cb01851 I 0.851
GLYMA02G09670 Glycine max GLYMA02G09670 I 0.851
Sb09g008120 Sorghum bicolor Sb09g008120 I 0.851
AMTR_s00121p00026620 Amborella trichopoda AMTR_s00121p00026620 I 0.851
Pavir.Ca00449 Panicum virgatum Pavir.Ca00449 I 0.851
Bra024993 Brassica rapa Bra024993 I 0.851
Cucsa.321840 Cucumis sativus Cucsa.321840 I 0.848
Cla008954 Citrullus lanatus Cla008954 I 0.848
Gorai.004G129600 Gossypium raimondii Gorai.004G129600 I 0.847
BGIOSGA004292 Oryza indica BGIOSGA004292 I 0.846
LPERR01G24170 Leersia perrieri LPERR01G24170 I 0.846
Pavir.J12952 Panicum virgatum Pavir.J12952 I 0.846
OPUNC01G27950 Oryza punctata OPUNC01G27950 I 0.846
ORGLA01G0232100 Oryza glaberrima ORGLA01G0232100 I 0.846
OS01G0705700 Oryza sativa OS01G0705700 I 0.846
GRMZM2G159937 Zea mays GRMZM2G159937 I 0.846
ONIVA01G32020 Oryza nivara ONIVA01G32020 I 0.846
BRADI2G47730 Brachypodium distachyon BRADI2G47730 I 0.846
OGLUM01G32030 Oryza glumaepatula OGLUM01G32030 I 0.846
TRAES3BF058400020CFD_g Triticum aestivum TRAES3BF058400020CFD_g I 0.846
OBART01G28080 Oryza barthii OBART01G28080 I 0.846
Si004795m.g Setaria italica Si004795m.g I 0.846
Sb03g032420 Sorghum bicolor Sb03g032420 I 0.846
ORUFI01G31210 Oryza rufipogon ORUFI01G31210 I 0.846
Pavir.J39604 Panicum virgatum Pavir.J39604 I 0.846
TRAES3BF036800040CFD_g Triticum aestivum TRAES3BF036800040CFD_g I 0.846
MLOC_70409 Hordeum vulgare MLOC_70409 I 0.846
Bo9g066680 Brassica oleracea Bo9g066680 I 0.840
Bo5g086990 Brassica oleracea Bo5g086990 I 0.840
Bra013263 Brassica rapa Bra013263 I 0.840
Bra010178 Brassica rapa Bra010178 I 0.840
Gorai.003G182100 Gossypium raimondii Gorai.003G182100 I 0.840
Bo9g065530 Brassica oleracea Bo9g065530 I 0.840
Bo8g028850 Brassica oleracea Bo8g028850 I 0.840
Bo7g075710 Brassica oleracea Bo7g075710 I 0.840
gene10501-v1.0-hybrid Fragaria vesca gene10501-v1.0-hybrid I 0.840
MYC3 Arabidopsis thaliana AT5G46760 D 0.840
Thhalv10000808m.g Eutrema salsugineum Thhalv10000808m.g I 0.840
SapurV1A.0151s0080 Salix purpurea SapurV1A.0151s0080 I 0.840
Thhalv10007075m.g Eutrema salsugineum Thhalv10007075m.g I 0.840
Thhalv10024688m.g Eutrema salsugineum Thhalv10024688m.g I 0.840
chr2.CM0177.830.nc Lotus japonicus chr2.CM0177.830.nc I 0.840
PK18474.1 Cannabis sativa PK18474.1 D 0.840
MYC2 Arabidopsis thaliana AT1G32640 D 0.840
MYC4 Arabidopsis thaliana AT4G17880 D 0.840
Bo1g017990 Brassica oleracea Bo1g017990 I 0.840
MDP0000136498 Malus domestica MDP0000136498 I 0.840
Bo01130s010 Brassica oleracea Bo01130s010 I 0.840
BGIOSGA026551 Oryza indica BGIOSGA026551 I 0.840
Bra017523 Brassica rapa Bra017523 I 0.840
MDP0000029168 Malus domestica MDP0000029168 I 0.840
GLYMA01G02251 Glycine max GLYMA01G02251 I 0.840
scaffold_800152.1 Arabidopsis lyrata scaffold_800152.1 I 0.840
ATMYC2 Arabidopsis lyrata scaffold_103634.1 I 0.840
PRUPE_ppa002404mg Prunus persica PRUPE_ppa002404mg I 0.840
Solyc08g076930.1 Solanum lycopersicum Solyc08g076930.1 I 0.840
MTR_5g030430 Medicago truncatula MTR_5g030430 I 0.840
Ca_11514 Cicer arietinum Ca_11514 I 0.840
LPERR03G22350 Leersia perrieri LPERR03G22350 I 0.840
POPTR_0003s09090 Populus trichocarpa POPTR_0003s09090 I 0.840
OGLUM08G23650 Oryza glumaepatula OGLUM08G23650 I 0.840
OS08G0543700 Oryza sativa OS08G0543700 I 0.840
ORUFI08G24840 Oryza rufipogon ORUFI08G24840 I 0.840
ORGLA08G0221300 Oryza glaberrima ORGLA08G0221300 I 0.840
PGSC0003DMG400001161 Solanum tuberosum PGSC0003DMG400001161 I 0.840
ONIVA08G25370 Oryza nivara ONIVA08G25370 I 0.840
OMERI08G17270 Oryza meridionalis OMERI08G17270 I 0.840
PGSC0003DMG400017535 Solanum tuberosum PGSC0003DMG400017535 I 0.840
Ca_12352 Cicer arietinum Ca_12352 I 0.840
Pm023237 Prunus mume Pm023237 I 0.840
Bra024998 Brassica rapa Bra024998 I 0.840
Cagra.3356s0080 Capsella grandiflora Cagra.3356s0080 I 0.840
Cagra.0751s0023 Capsella grandiflora Cagra.0751s0023 I 0.840
Cagra.7865s0024 Capsella grandiflora Cagra.7865s0024 I 0.840
Carubv10004392m.g Capsella rubella Carubv10004392m.g I 0.840
Carubv10028441m.g Capsella rubella Carubv10028441m.g I 0.840
Carubv10008586m.g Capsella rubella Carubv10008586m.g I 0.840
Bostr.3359s0090 Boechera stricta Bostr.3359s0090 I 0.840
Bostr.30275s0255 Boechera stricta Bostr.30275s0255 I 0.840
GLYMA01G12740 Glycine max GLYMA01G12740 I 0.840
GLYMA08G36720 Glycine max GLYMA08G36720 I 0.840
GLYMA09G33730 Glycine max GLYMA09G33730 I 0.840
Cucsa.178140 Cucumis sativus Cucsa.178140 I 0.840
mgf002775m Mimulus guttatus mgf002775m I 0.840
Bostr.28243s0060 Boechera stricta Bostr.28243s0060 I 0.840
fgenesh2_kg.7__2520__AT4G17880.1 Arabidopsis lyrata fgenesh2_kg.7__2520__AT4G17880.1 I 0.840
Bra017527 Brassica rapa Bra017527 I 0.840