CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ATNIG1
(
Arabidopsis lyrata
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Al_scaffold_0008_132
T030458_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH28
M06742_2.00
Arabidopsis thaliana
NNNYGTACGGAH
DTCCGTACRNNN
Dap-seq
OMalley et al.(2016)
bHLH28_col_a
0.914
0.959
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Al_scaffold_0008_132
bHLH
335
383
PLNHVEAERMRREKLNHRFYALRAVVPNISKMDKTSLLEDAVHYINELK
Links
Other
bHLH
family TFs
Other
Arabidopsis lyrata
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BHLH28
Arabidopsis thaliana
AT5G46830
D
0.914
Cagra.0751s0016
Capsella grandiflora
Cagra.0751s0016
I
0.894
Carubv10028430m.g
Capsella rubella
Carubv10028430m.g
I
0.894
MDP0000183948
Malus domestica
MDP0000183948
I
0.856
MDP0000137325
Malus domestica
MDP0000137325
I
0.856
Eucgr.B00713
Eucalyptus grandis
Eucgr.B00713
I
0.856
Bostr.28243s0053
Boechera stricta
Bostr.28243s0053
I
0.856
MDP0000442310
Malus domestica
MDP0000442310
I
0.856
Solyc08g083170.1
Solanum lycopersicum
Solyc08g083170.1
I
0.856
Pm023735
Prunus mume
Pm023735
I
0.856
Pm023738
Prunus mume
Pm023738
I
0.856
Pm028607
Prunus mume
Pm028607
I
0.856
Pm029399
Prunus mume
Pm029399
I
0.856
Pm028606
Prunus mume
Pm028606
I
0.856
Pm028605
Prunus mume
Pm028605
I
0.856
Pm028604
Prunus mume
Pm028604
I
0.856
PRUPE_ppa027182mg
Prunus persica
PRUPE_ppa027182mg
I
0.856
PRUPE_ppa025417mg
Prunus persica
PRUPE_ppa025417mg
I
0.856
MDP0000710285
Malus domestica
MDP0000710285
I
0.856
PGSC0003DMG400012237
Solanum tuberosum
PGSC0003DMG400012237
I
0.856
MTR_8g024790
Medicago truncatula
MTR_8g024790
I
0.856
MTR_8g024770
Medicago truncatula
MTR_8g024770
I
0.856
PRUPE_ppa005343mg
Prunus persica
PRUPE_ppa005343mg
I
0.856
gene01894-v1.0-hybrid
Fragaria vesca
gene01894-v1.0-hybrid
I
0.856
PRUPE_ppa022201mg
Prunus persica
PRUPE_ppa022201mg
I
0.856
PRUPE_ppa016220mg
Prunus persica
PRUPE_ppa016220mg
I
0.856
PRUPE_ppa022165mg
Prunus persica
PRUPE_ppa022165mg
I
0.856
OB07G15330
Oryza brachyantha
OB07G15330
I
0.849
PRUPE_ppa015634mg
Prunus persica
PRUPE_ppa015634mg
I
0.845
gene18651-v1.0-hybrid
Fragaria vesca
gene18651-v1.0-hybrid
I
0.844
Gorai.001G151700
Gossypium raimondii
Gorai.001G151700
I
0.844
evm.TU.supercontig_141.19
Carica papaya
evm.TU.supercontig_141.19
I
0.844
Gorai.004G149500
Gossypium raimondii
Gorai.004G149500
I
0.844
Eucgr.E00019
Eucalyptus grandis
Eucgr.E00019
I
0.844
MDP0000224302
Malus domestica
MDP0000224302
I
0.844
MDP0000900024
Malus domestica
MDP0000900024
I
0.844
orange1.1g046178m.g
Citrus sinensis
orange1.1g046178m.g
I
0.844
SapurV1A.0003s0670
Salix purpurea
SapurV1A.0003s0670
I
0.844
MDP0000859492
Malus domestica
MDP0000859492
I
0.844
MDP0000729514
Malus domestica
MDP0000729514
I
0.844
Gorai.008G128800
Gossypium raimondii
Gorai.008G128800
I
0.844
MDP0000242554
Malus domestica
MDP0000242554
I
0.844
Gorai.007G111800
Gossypium raimondii
Gorai.007G111800
I
0.844
27964.m000352
Ricinus communis
27964.m000352
I
0.844
Solyc01g096370.2
Solanum lycopersicum
Solyc01g096370.2
I
0.844
TCM_005064
Theobroma cacao
TCM_005064
I
0.844
VIT_02s0025g02610
Vitis vinifera
VIT_02s0025g02610
I
0.844
PRUPE_ppa004680mg
Prunus persica
PRUPE_ppa004680mg
I
0.844
POPTR_0002s17750
Populus trichocarpa
POPTR_0002s17750
I
0.844
GLYMA16G02320
Glycine max
GLYMA16G02320
I
0.844
GSMUA_Achr1G18910_001
Musa acuminata
GSMUA_Achr1G18910_001
I
0.844
PGSC0003DMG400018332
Solanum tuberosum
PGSC0003DMG400018332
I
0.844
VIT_15s0048g02820
Vitis vinifera
VIT_15s0048g02820
I
0.844
Ciclev10019749m.g
Citrus clementina
Ciclev10019749m.g
I
0.844
Bostr.7365s0026
Boechera stricta
Bostr.7365s0026
I
0.844
Cagra.4923s0009
Capsella grandiflora
Cagra.4923s0009
I
0.844
Carubv10001082m.g
Capsella rubella
Carubv10001082m.g
I
0.844
Aquca_037_00261
Aquilegia coerulea
Aquca_037_00261
I
0.844
mgf001993m
Mimulus guttatus
mgf001993m
I
0.844
27964.m000356
Ricinus communis
27964.m000356
I
0.844
cassava29800.valid.m1
Manihot esculenta
cassava29800.valid.m1
I
0.844
cassava32651.m1
Manihot esculenta
cassava32651.m1
I
0.844
GLYMA07G05740
Glycine max
GLYMA07G05740
I
0.844
Ca_17603
Cicer arietinum
Ca_17603
I
0.843