CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMTR_s00070p00149100
(
Amborella trichopoda
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
AMTR_s00070p00149100
T030516_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.903
0.918
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.903
0.918
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN
NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.861
0.837
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ERN20643
bHLH
230
278
HPRSIAERVRRTRISDRIQKLQELVPNMDKQTNTADMLEEAIEYVKSLQ
Links
Other
bHLH
family TFs
Other
Amborella trichopoda
TFs
119 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.013G138300
Gossypium raimondii
Gorai.013G138300
I
0.903
Solyc06g065040.2
Solanum lycopersicum
Solyc06g065040.2
I
0.903
TCM_036484
Theobroma cacao
TCM_036484
I
0.903
BHLH80
Arabidopsis thaliana
AT1G35460
D
0.903
VIT_18s0041g00690
Vitis vinifera
VIT_18s0041g00690
I
0.903
scaffold_103992.1
Arabidopsis lyrata
scaffold_103992.1
I
0.903
MDP0000269890
Malus domestica
MDP0000269890
I
0.903
SapurV1A.0690s0120
Salix purpurea
SapurV1A.0690s0120
I
0.903
PGSC0003DMG400031314
Solanum tuberosum
PGSC0003DMG400031314
I
0.903
orange1.1g023215m.g
Citrus sinensis
orange1.1g023215m.g
I
0.903
PRUPE_ppa011017mg
Prunus persica
PRUPE_ppa011017mg
I
0.903
gene26880-v1.0-hybrid
Fragaria vesca
gene26880-v1.0-hybrid
I
0.903
Pm004181
Prunus mume
Pm004181
I
0.903
Cagra.18223s0002
Capsella grandiflora
Cagra.18223s0002
I
0.903
Bostr.25463s0393
Boechera stricta
Bostr.25463s0393
I
0.903
mgf002701m
Mimulus guttatus
mgf002701m
I
0.903
Bostr.1774s0027
Boechera stricta
Bostr.1774s0027
I
0.903
Cucsa.061590
Cucumis sativus
Cucsa.061590
I
0.903
Cagra.9781s0002
Capsella grandiflora
Cagra.9781s0002
I
0.903
cassava13743.valid.m1
Manihot esculenta
cassava13743.valid.m1
I
0.903
Ciclev10002083m.g
Citrus clementina
Ciclev10002083m.g
I
0.903
Carubv10010050m.g
Capsella rubella
Carubv10010050m.g
I
0.903
Carubv10001721m.g
Capsella rubella
Carubv10001721m.g
I
0.903
SapurV1A.1647s0020
Salix purpurea
SapurV1A.1647s0020
I
0.903
SapurV1A.0391s0050
Salix purpurea
SapurV1A.0391s0050
I
0.903
Bo6g043840
Brassica oleracea
Bo6g043840
I
0.903
Thhalv10028883m.g
Eutrema salsugineum
Thhalv10028883m.g
I
0.903
BHLH81
Arabidopsis thaliana
AT4G09180
I
0.903
fgenesh2_kg.6__2924__AT4G09180.1
Arabidopsis lyrata
fgenesh2_kg.6__2924__AT4G09180.1
I
0.903
Bo8g026850
Brassica oleracea
Bo8g026850
I
0.903
PK06301.1
Cannabis sativa
PK06301.1
I
0.903
GLYMA08G26110
Glycine max
GLYMA08G26110
I
0.903
Bra036760
Brassica rapa
Bra036760
I
0.903
Bra028088
Brassica rapa
Bra028088
I
0.903
Bra034421
Brassica rapa
Bra034421
I
0.879
Bo5g085170
Brassica oleracea
Bo5g085170
I
0.879
MTR_4g033295
Medicago truncatula
MTR_4g033295
I
0.876
TRIUR3_26625
Triticum urartu
TRIUR3_26625
I
0.861
OB08G26810
Oryza brachyantha
OB08G26810
I
0.861
Traes_7AS_4FAB72487
Triticum aestivum
Traes_7AS_4FAB72487
I
0.861
MLOC_67834
Hordeum vulgare
MLOC_67834
I
0.861
Traes_7DS_B671A4EAD
Triticum aestivum
Traes_7DS_B671A4EAD
I
0.861
F775_24151
Aegilops tauschii
F775_24151
I
0.861
BGIOSGA031008
Oryza indica
BGIOSGA031008
I
0.861
OLONG_017566
Oryza longistaminata
OLONG_017566
I
0.861
BGIOSGA028963
Oryza indica
BGIOSGA028963
I
0.861
OPUNC08G18020
Oryza punctata
OPUNC08G18020
I
0.861
OPUNC09G13060
Oryza punctata
OPUNC09G13060
I
0.861
ORGLA08G0174800
Oryza glaberrima
ORGLA08G0174800
I
0.861
ONIVA08G22410
Oryza nivara
ONIVA08G22410
I
0.861
ONIVA08G17500
Oryza nivara
ONIVA08G17500
I
0.861
OMERI08G16700
Oryza meridionalis
OMERI08G16700
I
0.861
OMERI09G11370
Oryza meridionalis
OMERI09G11370
I
0.861
ORGLA09G0112900
Oryza glaberrima
ORGLA09G0112900
I
0.861
ORUFI08G22260
Oryza rufipogon
ORUFI08G22260
I
0.861
OGLUM08G21000
Oryza glumaepatula
OGLUM08G21000
I
0.861
BRADI3G39927
Brachypodium distachyon
BRADI3G39927
I
0.861
OBART09G14660
Oryza barthii
OBART09G14660
I
0.861
OGLUM09G15300
Oryza glumaepatula
OGLUM09G15300
I
0.861
OS09G0487900
Oryza sativa
OS09G0487900
I
0.861
ORUFI09G15820
Oryza rufipogon
ORUFI09G15820
I
0.861
OS08G0506700
Oryza sativa
OS08G0506700
D
0.861
OBART08G19860
Oryza barthii
OBART08G19860
I
0.861
gw1.185.89.1
Physcomitrella patens
gw1.185.89.1
I
0.858
Aquca_058_00134
Aquilegia coerulea
Aquca_058_00134
I
0.854
Ciclev10005233m.g
Citrus clementina
Ciclev10005233m.g
I
0.849
Eucgr.A02417
Eucalyptus grandis
Eucgr.A02417
I
0.849
Lus10031255.g
Linum usitatissimum
Lus10031255.g
I
0.849
MDP0000180376
Malus domestica
MDP0000180376
I
0.849
Lus10031826.g
Linum usitatissimum
Lus10031826.g
I
0.849
orange1.1g018007m.g
Citrus sinensis
orange1.1g018007m.g
I
0.849
SapurV1A.0018s0320
Salix purpurea
SapurV1A.0018s0320
I
0.849
SapurV1A.0133s0050
Salix purpurea
SapurV1A.0133s0050
I
0.849
Lus10021023.g
Linum usitatissimum
Lus10021023.g
I
0.849
PK18038.1
Cannabis sativa
PK18038.1
I
0.849
gene20622-v1.0-hybrid
Fragaria vesca
gene20622-v1.0-hybrid
I
0.849
gene00545-v1.0-hybrid
Fragaria vesca
gene00545-v1.0-hybrid
I
0.849
Gorai.002G228900
Gossypium raimondii
Gorai.002G228900
I
0.849
Gorai.006G140200
Gossypium raimondii
Gorai.006G140200
I
0.849
PDK_20s1391471g001
Phoenix dactylifera
PDK_20s1391471g001
I
0.849
evm.TU.supercontig_84.89
Carica papaya
evm.TU.supercontig_84.89
I
0.849
VIT_08s0007g07810
Vitis vinifera
VIT_08s0007g07810
I
0.849
POPTR_0006s05640
Populus trichocarpa
POPTR_0006s05640
I
0.849
Cla017792
Citrullus lanatus
Cla017792
I
0.849
Pm000447
Prunus mume
Pm000447
I
0.849
Pm025821
Prunus mume
Pm025821
I
0.849
TCM_024842
Theobroma cacao
TCM_024842
I
0.849
Aquca_009_00280
Aquilegia coerulea
Aquca_009_00280
I
0.849
PRUPE_ppa019977mg
Prunus persica
PRUPE_ppa019977mg
I
0.849
POPTR_0016s05100
Populus trichocarpa
POPTR_0016s05100
I
0.849
Solyc10g079050.1
Solanum lycopersicum
Solyc10g079050.1
I
0.849
PRUPE_ppa006295mg
Prunus persica
PRUPE_ppa006295mg
I
0.849
29216.m000261
Ricinus communis
29216.m000261
I
0.849
cassava44054.valid.m1
Manihot esculenta
cassava44054.valid.m1
I
0.849
Cucsa.242910
Cucumis sativus
Cucsa.242910
I
0.849
GLYMA10G12150
Glycine max
GLYMA10G12150
I
0.849
mgf016734m
Mimulus guttatus
mgf016734m
I
0.849
cassava35967.valid.m1
Manihot esculenta
cassava35967.valid.m1
I
0.849
cassava30692.valid.m1
Manihot esculenta
cassava30692.valid.m1
I
0.849
GSMUA_Achr5G22310_001
Musa acuminata
GSMUA_Achr5G22310_001
I
0.849
PGSC0003DMG400008153
Solanum tuberosum
PGSC0003DMG400008153
I
0.849
GSMUA_Achr7G20490_001
Musa acuminata
GSMUA_Achr7G20490_001
I
0.849
cassava2126.valid.m1
Manihot esculenta
cassava2126.valid.m1
I
0.849
POPTR_0009s06910
Populus trichocarpa
POPTR_0009s06910
I
0.847
PGSC0003DMG400025263
Solanum tuberosum
PGSC0003DMG400025263
I
0.847
TCM_005925
Theobroma cacao
TCM_005925
I
0.847
30152.m002405
Ricinus communis
30152.m002405
I
0.847
cassava29651.valid.m1
Manihot esculenta
cassava29651.valid.m1
I
0.847
e_gw1.34.393.1
Physcomitrella patens
e_gw1.34.393.1
I
0.847
Solyc01g086870.2
Solanum lycopersicum
Solyc01g086870.2
I
0.847
30074.m001421
Ricinus communis
30074.m001421
I
0.847
Gorai.004G035800
Gossypium raimondii
Gorai.004G035800
I
0.847
VIT_13s0064g01290
Vitis vinifera
VIT_13s0064g01290
I
0.847
PDK_20s1630671g001
Phoenix dactylifera
PDK_20s1630671g001
I
0.846
Solyc11g056650.1
Solanum lycopersicum
Solyc11g056650.1
I
0.846
PGSC0003DMG400022058
Solanum tuberosum
PGSC0003DMG400022058
I
0.846
PDK_20s1484071g001
Phoenix dactylifera
PDK_20s1484071g001
I
0.846
GSMUA_Achr6G21220_001
Musa acuminata
GSMUA_Achr6G21220_001
I
0.845
Pavir.Aa01423
Panicum virgatum
Pavir.Aa01423
I
0.845