SCRM2 (Arabidopsis thaliana)

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 AT1G12860 T030586_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Arabidopsis thaliana Transfac license required
Transfac license required
Matys et al.(2006)
0.914 1.000
Arabidopsis thaliana Transfac license required
Transfac license required
Matys et al.(2006)
0.847 0.833
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G12860.1 bHLH 266 313
AT1G12860.2 bHLH 266 313
AT1G12860.3 bHLH 266 302


Other bHLH family TFs
Other Arabidopsis thaliana TFs

246 Related TFs

Name Species Gene ID Motif Evidence SR
30131.m006993 Ricinus communis 30131.m006993 I 0.879
30147.m014419 Ricinus communis 30147.m014419 I 0.914
30198.m000869 Ricinus communis 30198.m000869 I 0.840
AMS Arabidopsis lyrata fgenesh2_kg.3__3272__AT2G16910.1 I 0.847
AMS Arabidopsis thaliana AT2G16910 D 0.847
AMS Populus trichocarpa POPTR_0009s13860 I 0.847
AMTR_s00016p00170610 Amborella trichopoda AMTR_s00016p00170610 I 0.914
AMTR_s00019p00254380 Amborella trichopoda AMTR_s00019p00254380 I 0.860
AMTR_s00096p00160080 Amborella trichopoda AMTR_s00096p00160080 I 0.869
Aquca_018_00039 Aquilegia coerulea Aquca_018_00039 I 0.840
Aquca_019_00147 Aquilegia coerulea Aquca_019_00147 I 0.890
Aquca_072_00056 Aquilegia coerulea Aquca_072_00056 I 0.887
Aquca_100_00035 Aquilegia coerulea Aquca_100_00035 I 0.914
BGIOSGA000206 Oryza indica BGIOSGA000206 I 0.914
BGIOSGA035358 Oryza indica BGIOSGA035358 I 0.914
Bo00285s440 Brassica oleracea Bo00285s440 I 0.914
Bo01390s040 Brassica oleracea Bo01390s040 I 0.852
Bo3g091780 Brassica oleracea Bo3g091780 I 0.847
Bo5g016490 Brassica oleracea Bo5g016490 I 0.852
Bo5g016510 Brassica oleracea Bo5g016510 I 0.914
Bo7g016210 Brassica oleracea Bo7g016210 I 0.847
Bo7g083870 Brassica oleracea Bo7g083870 I 0.914
Bo8g065080 Brassica oleracea Bo8g065080 I 0.914
Bo9g008020 Brassica oleracea Bo9g008020 I 0.914
Bostr.0556s0344 Boechera stricta Bostr.0556s0344 I 0.914
Bostr.13671s0164 Boechera stricta Bostr.13671s0164 I 0.914
Bostr.18351s0148 Boechera stricta Bostr.18351s0148 I 0.847
Bra002004 Brassica rapa Bra002004 I 0.847
Bra013041 Brassica rapa Bra013041 I 0.847
Bra016749 Brassica rapa Bra016749 I 0.914
Bra019794 Brassica rapa Bra019794 I 0.914
Bra025226 Brassica rapa Bra025226 I 0.914
Bra032947 Brassica rapa Bra032947 I 0.914
Bra034246 Brassica rapa Bra034246 I 0.914
BRADI2G59497 Brachypodium distachyon BRADI2G59497 I 0.914
BRADI3G01910 Brachypodium distachyon BRADI3G01910 I 0.860
BRADI4G17460 Brachypodium distachyon BRADI4G17460 I 0.884
Cagra.0568s0207 Capsella grandiflora Cagra.0568s0207 I 0.884
Cagra.10862s0002 Capsella grandiflora Cagra.10862s0002 I 0.847
Cagra.23157s0001 Capsella grandiflora Cagra.23157s0001 I 0.914
Carubv10009081m.g Capsella rubella Carubv10009081m.g I 0.884
Carubv10016240m.g Capsella rubella Carubv10016240m.g I 0.847
Carubv10017099m.g Capsella rubella Carubv10017099m.g I 0.914
cassava17838.valid.m1 Manihot esculenta cassava17838.valid.m1 I 0.914
cassava2551.valid.m1 Manihot esculenta cassava2551.valid.m1 I 0.847
cassava2552.valid.m1 Manihot esculenta cassava2552.valid.m1 I 0.847
cassava2997.m1 Manihot esculenta cassava2997.m1 I 0.840
cassava37254.valid.m1 Manihot esculenta cassava37254.valid.m1 I 0.914
cassava7475.valid.m1 Manihot esculenta cassava7475.valid.m1 I 0.879
Ca_01394 Cicer arietinum Ca_01394 I 0.914
Ca_05416 Cicer arietinum Ca_05416 I 0.847
Ca_23693 Cicer arietinum Ca_23693 I 0.847
Ca_23694 Cicer arietinum Ca_23694 I 0.847
Ca_23892 Cicer arietinum Ca_23892 I 0.903 Lotus japonicus I 0.914
Ciclev10009285m.g Citrus clementina Ciclev10009285m.g I 0.840
Ciclev10015052m.g Citrus clementina Ciclev10015052m.g I 0.914
Ciclev10033428m.g Citrus clementina Ciclev10033428m.g I 0.849
Cla002682 Citrullus lanatus Cla002682 I 0.914
Cla003283 Citrullus lanatus Cla003283 I 0.914
Cla016068 Citrullus lanatus Cla016068 I 0.870
Cla023112 Citrullus lanatus Cla023112 I 0.860
Cucsa.010660 Cucumis sativus Cucsa.010660 I 0.870
Cucsa.088960 Cucumis sativus Cucsa.088960 I 0.860
Cucsa.134750 Cucumis sativus Cucsa.134750 I 0.914
Cucsa.156040 Cucumis sativus Cucsa.156040 I 0.914
estExt_fgenesh1_pg.C_1240017 Physcomitrella patens estExt_fgenesh1_pg.C_1240017 I 0.887
estExt_fgenesh1_pg.C_1590022 Physcomitrella patens estExt_fgenesh1_pg.C_1590022 I 0.870
estExt_fgenesh1_pg.C_300202 Physcomitrella patens estExt_fgenesh1_pg.C_300202 I 0.914
estExt_Genewise1.C_510113 Physcomitrella patens estExt_Genewise1.C_510113 I 0.914
estExt_gwp_gw1.C_1820005 Physcomitrella patens estExt_gwp_gw1.C_1820005 I 0.867
Eucgr.C02208 Eucalyptus grandis Eucgr.C02208 I 0.840
Eucgr.G01783 Eucalyptus grandis Eucgr.G01783 I 0.877
Eucgr.G01938 Eucalyptus grandis Eucgr.G01938 I 0.914
evm.TU.supercontig_1024.1 Carica papaya evm.TU.supercontig_1024.1 I 0.890
evm.TU.supercontig_20.95 Carica papaya evm.TU.supercontig_20.95 I 0.877
evm.TU.supercontig_70.77 Carica papaya evm.TU.supercontig_70.77 I 0.914
e_gw1.25.105.1 Physcomitrella patens e_gw1.25.105.1 I 0.870
F775_14780 Aegilops tauschii F775_14780 I 0.914
F775_15875 Aegilops tauschii F775_15875 I 0.860
fgenesh1_pg.scaffold_1000274 Physcomitrella patens fgenesh1_pg.scaffold_1000274 I 0.867
gene06435-v1.0-hybrid Fragaria vesca gene06435-v1.0-hybrid I 0.914
gene17273-v1.0-hybrid Fragaria vesca gene17273-v1.0-hybrid I 0.840
gene23716-v1.0-hybrid Fragaria vesca gene23716-v1.0-hybrid I 0.847
GLYMA04G37750 Glycine max GLYMA04G37750 I 0.914
GLYMA05G38530 Glycine max GLYMA05G38530 I 0.884
GLYMA06G17330 Glycine max GLYMA06G17330 I 0.914
GLYMA09G06770 Glycine max GLYMA09G06770 I 0.840
GLYMA10G42830 Glycine max GLYMA10G42830 I 0.847
GLYMA13G00480 Glycine max GLYMA13G00480 I 0.860
GLYMA15G18070 Glycine max GLYMA15G18070 I 0.840
GLYMA16G05390 Glycine max GLYMA16G05390 I 0.914
GLYMA16G26291 Glycine max GLYMA16G26291 I 0.857
GLYMA17G06610 Glycine max GLYMA17G06610 I 0.860
GLYMA19G27483 Glycine max GLYMA19G27483 I 0.914
GLYMA20G24170 Glycine max GLYMA20G24170 I 0.847
Gorai.001G275600 Gossypium raimondii Gorai.001G275600 I 0.914
Gorai.007G044800 Gossypium raimondii Gorai.007G044800 I 0.914
Gorai.007G072600 Gossypium raimondii Gorai.007G072600 I 0.914
Gorai.008G036900 Gossypium raimondii Gorai.008G036900 I 0.857
Gorai.008G159000 Gossypium raimondii Gorai.008G159000 N 0.844
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I 0.840
Gorai.013G242800 Gossypium raimondii Gorai.013G242800 I 0.840
GRMZM2G033356 Zea mays GRMZM2G033356 I 0.914
GRMZM2G172297 Zea mays GRMZM2G172297 I 0.914
GRMZM2G173534 Zea mays GRMZM2G173534 I 0.914
GSMUA_Achr10G12060_001 Musa acuminata GSMUA_Achr10G12060_001 I 0.914
GSMUA_Achr10G18380_001 Musa acuminata GSMUA_Achr10G18380_001 I 0.914
GSMUA_Achr11G09640_001 Musa acuminata GSMUA_Achr11G09640_001 I 0.903
GSMUA_Achr1G07330_001 Musa acuminata GSMUA_Achr1G07330_001 I 0.890
GSMUA_Achr1G07450_001 Musa acuminata GSMUA_Achr1G07450_001 I 0.890
GSMUA_Achr6G08070_001 Musa acuminata GSMUA_Achr6G08070_001 I 0.914
gw1.257.54.1 Physcomitrella patens gw1.257.54.1 I 0.890
gw1.90.96.1 Physcomitrella patens gw1.90.96.1 I 0.887
ICE1 Arabidopsis lyrata fgenesh2_kg.5__441__AT3G26744.2 I 0.914
LjSGA_024382.1 Lotus japonicus LjSGA_024382.1 I 0.914
LjSGA_106153.1 Lotus japonicus LjSGA_106153.1 I 0.847
LPERR01G37160 Leersia perrieri LPERR01G37160 I 0.914
LPERR11G11940 Leersia perrieri LPERR11G11940 I 0.914
Lus10006951.g Linum usitatissimum Lus10006951.g I 0.840
Lus10032542.g Linum usitatissimum Lus10032542.g I 0.884
Lus10043199.g Linum usitatissimum Lus10043199.g I 0.884
MDP0000133262 Malus domestica MDP0000133262 I 0.840
MDP0000219146 Malus domestica MDP0000219146 I 0.890
MDP0000247912 Malus domestica MDP0000247912 I 0.914
MDP0000304669 Malus domestica MDP0000304669 I 0.914
MDP0000318229 Malus domestica MDP0000318229 I 0.840
MDP0000405748 Malus domestica MDP0000405748 I 0.847
MDP0000662999 Malus domestica MDP0000662999 I 0.914
mgf012194m Mimulus guttatus mgf012194m I 0.914
mgf015974m Mimulus guttatus mgf015974m I 0.914
mgf016462m Mimulus guttatus mgf016462m I 0.914
mgf018455m Mimulus guttatus mgf018455m I 0.847
mgf024029m Mimulus guttatus mgf024029m I 0.840
MLOC_46407 Hordeum vulgare MLOC_46407 I 0.914
MLOC_52192 Hordeum vulgare MLOC_52192 I 0.860
MLOC_56814 Hordeum vulgare MLOC_56814 I 0.849
MLOC_76805 Hordeum vulgare MLOC_76805 I 0.914
MTR_1g112680 Medicago truncatula MTR_1g112680 I 0.847
MTR_2g038040 Medicago truncatula MTR_2g038040 I 0.840
MTR_3g498695 Medicago truncatula MTR_3g498695 I 0.914
MTR_7g083900 Medicago truncatula MTR_7g083900 I 0.903
OBART01G42600 Oryza barthii OBART01G42600 I 0.914
OBART11G15260 Oryza barthii OBART11G15260 I 0.914
OGLUM01G46870 Oryza glumaepatula OGLUM01G46870 I 0.914
OGLUM11G14700 Oryza glumaepatula OGLUM11G14700 I 0.914
OMERI01G39590 Oryza meridionalis OMERI01G39590 I 0.914
OMERI11G12580 Oryza meridionalis OMERI11G12580 I 0.914
ONIVA01G48650 Oryza nivara ONIVA01G48650 I 0.914
ONIVA12G10770 Oryza nivara ONIVA12G10770 I 0.914
OPUNC01G41620 Oryza punctata OPUNC01G41620 I 0.914
OPUNC11G12640 Oryza punctata OPUNC11G12640 I 0.914
orange1.1g011370m.g Citrus sinensis orange1.1g011370m.g I 0.914
orange1.1g025665m.g Citrus sinensis orange1.1g025665m.g I 0.840
orange1.1g041101m.g Citrus sinensis orange1.1g041101m.g I 0.849
orange1.1g047004m.g Citrus sinensis orange1.1g047004m.g I 0.914
ORGLA01G0363500 Oryza glaberrima ORGLA01G0363500 I 0.914
ORGLA11G0129200 Oryza glaberrima ORGLA11G0129200 I 0.914
ORUFI01G46010 Oryza rufipogon ORUFI01G46010 I 0.914
ORUFI11G16280 Oryza rufipogon ORUFI11G16280 I 0.914
OS01G0928000 Oryza sativa OS01G0928000 I 0.914
OS11G0523700 Oryza sativa OS11G0523700 I 0.914
Pavir.Ab00204 Panicum virgatum Pavir.Ab00204 I 0.860
Pavir.Ea03858 Panicum virgatum Pavir.Ea03858 I 0.914
Pavir.Eb03736 Panicum virgatum Pavir.Eb03736 I 0.914
Pavir.Ha01426 Panicum virgatum Pavir.Ha01426 I 0.903
Pavir.Hb00982 Panicum virgatum Pavir.Hb00982 I 0.914
PDK_20s1347451g001 Phoenix dactylifera PDK_20s1347451g001 I 0.890
PGSC0003DMG400004087 Solanum tuberosum PGSC0003DMG400004087 I 0.840
PGSC0003DMG400008195 Solanum tuberosum PGSC0003DMG400008195 I 0.857
PGSC0003DMG400014246 Solanum tuberosum PGSC0003DMG400014246 I 0.890
PGSC0003DMG400017440 Solanum tuberosum PGSC0003DMG400017440 I 0.843
PGSC0003DMG401028788 Solanum tuberosum PGSC0003DMG401028788 I 0.884
PK03241.1 Cannabis sativa PK03241.1 I 0.857
PK06841.1 Cannabis sativa PK06841.1 I 0.890
PK06940.1 Cannabis sativa PK06940.1 I 0.914
Pm008898 Prunus mume Pm008898 I 0.870
Pm016093 Prunus mume Pm016093 I 0.914
Pm024587 Prunus mume Pm024587 I 0.914
POPTR_0006s07420 Populus trichocarpa POPTR_0006s07420 I 0.887
POPTR_0012s10780 Populus trichocarpa POPTR_0012s10780 I 0.914
POPTR_0015s11650 Populus trichocarpa POPTR_0015s11650 I 0.914
POPTR_0018s13830 Populus trichocarpa POPTR_0018s13830 I 0.874
POPTR_0018s13840 Populus trichocarpa POPTR_0018s13840 I 0.844
POPTR_0018s13850 Populus trichocarpa POPTR_0018s13850 I 0.850
POPTR_0018s13860 Populus trichocarpa POPTR_0018s13860 I 0.840
PRUPE_ppa002978mg Prunus persica PRUPE_ppa002978mg I 0.858
PRUPE_ppa005038mg Prunus persica PRUPE_ppa005038mg I 0.914
PRUPE_ppa010972mg Prunus persica PRUPE_ppa010972mg I 0.870
PRUPE_ppa018220mg Prunus persica PRUPE_ppa018220mg I 0.914
SapurV1A.0001s2820 Salix purpurea SapurV1A.0001s2820 I 0.844
SapurV1A.0140s0210 Salix purpurea SapurV1A.0140s0210 I 0.840
SapurV1A.0140s0240 Salix purpurea SapurV1A.0140s0240 I 0.850
SapurV1A.0140s0250 Salix purpurea SapurV1A.0140s0250 I 0.874
SapurV1A.0218s0460 Salix purpurea SapurV1A.0218s0460 I 0.847
SapurV1A.0517s0250 Salix purpurea SapurV1A.0517s0250 I 0.914
SapurV1A.0672s0200 Salix purpurea SapurV1A.0672s0200 I 0.914
SapurV1A.0774s0030 Salix purpurea SapurV1A.0774s0030 I 0.914
SapurV1A.3355s0010 Salix purpurea SapurV1A.3355s0010 I 0.850
SapurV1A.3355s0020 Salix purpurea SapurV1A.3355s0020 I 0.874
Sb03g044660 Sorghum bicolor Sb03g044660 I 0.914
Sb04g001650 Sorghum bicolor Sb04g001650 I 0.860
Sb05g019530 Sorghum bicolor Sb05g019530 I 0.914
SCRM Arabidopsis thaliana AT3G26744 D 0.914
SCRM2 Arabidopsis lyrata Al_scaffold_0001_1326 I 0.888
SELMODRAFT_119431 Selaginella moellendorffii SELMODRAFT_119431 I 0.914
SELMODRAFT_138758 Selaginella moellendorffii SELMODRAFT_138758 I 0.914
SELMODRAFT_16038 Selaginella moellendorffii SELMODRAFT_16038 I 0.870
SELMODRAFT_16039 Selaginella moellendorffii SELMODRAFT_16039 I 0.870
SELMODRAFT_430203 Selaginella moellendorffii SELMODRAFT_430203 I 0.870
SELMODRAFT_451590 Selaginella moellendorffii SELMODRAFT_451590 I 0.870
SELMODRAFT_75047 Selaginella moellendorffii SELMODRAFT_75047 I 0.914
SELMODRAFT_91237 Selaginella moellendorffii SELMODRAFT_91237 I 0.914
SELMODRAFT_94010 Selaginella moellendorffii SELMODRAFT_94010 I 0.914
Si001874m.g Setaria italica Si001874m.g I 0.914
Si006199m.g Setaria italica Si006199m.g I 0.843
Si006500m.g Setaria italica Si006500m.g I 0.857
Si019518m.g Setaria italica Si019518m.g I 0.840
Si026212m.g Setaria italica Si026212m.g I 0.914
Solyc03g118310.2 Solanum lycopersicum Solyc03g118310.2 I 0.914
Solyc05g014590.2 Solanum lycopersicum Solyc05g014590.2 I 0.843
Solyc06g068870.2 Solanum lycopersicum Solyc06g068870.2 I 0.884
Solyc07g018010.2 Solanum lycopersicum Solyc07g018010.2 I 0.840
Solyc08g062780.1 Solanum lycopersicum Solyc08g062780.1 I 0.857
TCM_006602 Theobroma cacao TCM_006602 I 0.857
TCM_014741 Theobroma cacao TCM_014741 I 0.914
TCM_017336 Theobroma cacao TCM_017336 I 0.914
TCM_039471 Theobroma cacao TCM_039471 I 0.840
Thhalv10004059m.g Eutrema salsugineum Thhalv10004059m.g I 0.914
Thhalv10007566m.g Eutrema salsugineum Thhalv10007566m.g I 0.914
Thhalv10022620m.g Eutrema salsugineum Thhalv10022620m.g I 0.847
TRAES3BF001100060CFD_g Triticum aestivum TRAES3BF001100060CFD_g I 0.914
Traes_3DL_4544FA87D Triticum aestivum Traes_3DL_4544FA87D I 0.469
Traes_4DS_7B0E8D459 Triticum aestivum Traes_4DS_7B0E8D459 I 0.860
Traes_6AS_4C2F64614 Triticum aestivum Traes_6AS_4C2F64614 I 0.840
Traes_7AL_ACAC47D88 Triticum aestivum Traes_7AL_ACAC47D88 I 0.914
Traes_7BL_BF5300D88 Triticum aestivum Traes_7BL_BF5300D88 I 0.914
Traes_7DL_2A7EF919F Triticum aestivum Traes_7DL_2A7EF919F I 0.914
TRIUR3_16046 Triticum urartu TRIUR3_16046 I 0.860
TRIUR3_17003 Triticum urartu TRIUR3_17003 I 0.914
VIT_01s0127g00860 Vitis vinifera VIT_01s0127g00860 I 0.877
VIT_01s0244g00130 Vitis vinifera VIT_01s0244g00130 I 0.914
VIT_11s0052g00100 Vitis vinifera VIT_11s0052g00100 I 0.840
VIT_14s0068g01200 Vitis vinifera VIT_14s0068g01200 I 0.914
VIT_17s0000g00330 Vitis vinifera VIT_17s0000g00330 I 0.914