BHLH54 (Arabidopsis thaliana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 AT1G27740 T030594_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Basic helix-loop-helix (bHLH) transcription factor that is sufficient to promote postmitotic cell growth in root-hair cells. RSL4 is a direct transcriptional target of RHD6

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G27740.1 bHLH 180 223

Links

Other bHLH family TFs
Other Arabidopsis thaliana TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra030063 Brassica rapa Bra030063 N 0.914
RSL4 Arabidopsis lyrata fgenesh2_kg.1__2933__AT1G27740.1 N 0.914
Bra010921 Brassica rapa Bra010921 N 0.914
gene25555-v1.0-hybrid Fragaria vesca gene25555-v1.0-hybrid N 0.914
Bra032846 Brassica rapa Bra032846 N 0.914
F775_27628 Aegilops tauschii F775_27628 N 0.914
Traes_4AL_6A6EC9A6A Triticum aestivum Traes_4AL_6A6EC9A6A N 0.914
Traes_4BS_9BFCC52AD Triticum aestivum Traes_4BS_9BFCC52AD N 0.914
Traes_4DS_7488F4608 Triticum aestivum Traes_4DS_7488F4608 N 0.914
Bo7g048630 Brassica oleracea Bo7g048630 N 0.914
Bo5g052310 Brassica oleracea Bo5g052310 N 0.914
Bostr.15697s0100 Boechera stricta Bostr.15697s0100 N 0.914
mgf019332m Mimulus guttatus mgf019332m N 0.914
chr5.CM0096.500.nd Lotus japonicus chr5.CM0096.500.nd N 0.914
chr5.CM0200.480.nc Lotus japonicus chr5.CM0200.480.nc N 0.914
Pm021172 Prunus mume Pm021172 N 0.914
Thhalv10009862m.g Eutrema salsugineum Thhalv10009862m.g N 0.914
Carubv10011072m.g Capsella rubella Carubv10011072m.g N 0.914
Bo3g142890 Brassica oleracea Bo3g142890 N 0.914
Cagra.1822s0081 Capsella grandiflora Cagra.1822s0081 N 0.914
MDP0000946515 Malus domestica MDP0000946515 N 0.913
MDP0000131874 Malus domestica MDP0000131874 N 0.892
MTR_3g103030 Medicago truncatula MTR_3g103030 N 0.882
BRADI1G70860 Brachypodium distachyon BRADI1G70860 N 0.882
Traes_4AS_7530AAEB4 Triticum aestivum Traes_4AS_7530AAEB4 N 0.880
MLOC_67369 Hordeum vulgare MLOC_67369 N 0.880
TRIUR3_01454 Triticum urartu TRIUR3_01454 N 0.880
Traes_4DL_61AE80723 Triticum aestivum Traes_4DL_61AE80723 N 0.880
28152.m000914 Ricinus communis 28152.m000914 N 0.879
30170.m013749 Ricinus communis 30170.m013749 N 0.879
AMTR_s00164p00062120 Amborella trichopoda AMTR_s00164p00062120 N 0.879
PRUPE_ppa015160mg Prunus persica PRUPE_ppa015160mg N 0.879
Pm005392 Prunus mume Pm005392 N 0.879
POPTR_0009s09210 Populus trichocarpa POPTR_0009s09210 N 0.879
Cla022968 Citrullus lanatus Cla022968 N 0.879
cassava14986.m1 Manihot esculenta cassava14986.m1 N 0.879
cassava38950.m1 Manihot esculenta cassava38950.m1 N 0.879
Cucsa.097490 Cucumis sativus Cucsa.097490 N 0.879
cassava25589.m1 Manihot esculenta cassava25589.m1 N 0.879
Cucsa.219180 Cucumis sativus Cucsa.219180 N 0.879
cassava20440.m1 Manihot esculenta cassava20440.m1 N 0.879
Sb01g007160 Sorghum bicolor Sb01g007160 N 0.879
POPTR_0002s12000 Populus trichocarpa POPTR_0002s12000 N 0.879
Ca_18366 Cicer arietinum Ca_18366 N 0.879
Cucsa.352750 Cucumis sativus Cucsa.352750 N 0.879
Traes_5AS_5B9D5E067 Triticum aestivum Traes_5AS_5B9D5E067 N 0.879
Traes_5DS_51467BEB4 Triticum aestivum Traes_5DS_51467BEB4 N 0.879
Solyc01g107140.1 Solanum lycopersicum Solyc01g107140.1 N 0.879
Solyc04g077960.1 Solanum lycopersicum Solyc04g077960.1 N 0.879
TCM_034717 Theobroma cacao TCM_034717 N 0.879
TCM_007220 Theobroma cacao TCM_007220 N 0.879
TRIUR3_24341 Triticum urartu TRIUR3_24341 N 0.879
VIT_03s0091g00730 Vitis vinifera VIT_03s0091g00730 N 0.879
Ca_11909 Cicer arietinum Ca_11909 N 0.879
Cla016346 Citrullus lanatus Cla016346 N 0.879
Ca_05644 Cicer arietinum Ca_05644 N 0.879
Ca_01588 Cicer arietinum Ca_01588 N 0.879
Si039720m.g Setaria italica Si039720m.g N 0.879
VIT_18s0001g09210 Vitis vinifera VIT_18s0001g09210 N 0.879
Cla020918 Citrullus lanatus Cla020918 N 0.879
Bostr.2199s0029 Boechera stricta Bostr.2199s0029 N 0.879
MDP0000573178 Malus domestica MDP0000573178 N 0.879
orange1.1g036928m.g Citrus sinensis orange1.1g036928m.g N 0.879
orange1.1g047654m.g Citrus sinensis orange1.1g047654m.g N 0.879
MDP0000198037 Malus domestica MDP0000198037 N 0.879
MDP0000145825 Malus domestica MDP0000145825 N 0.879
Gorai.010G025400 Gossypium raimondii Gorai.010G025400 N 0.879
Lus10001068.g Linum usitatissimum Lus10001068.g N 0.879
Lus10004315.g Linum usitatissimum Lus10004315.g N 0.879
Pavir.Ia00352 Panicum virgatum Pavir.Ia00352 N 0.879
Pavir.Ia04640 Panicum virgatum Pavir.Ia04640 N 0.879
Thhalv10026786m.g Eutrema salsugineum Thhalv10026786m.g N 0.879
PK01802.1 Cannabis sativa PK01802.1 N 0.879
chr1.CM0088.610.nd Lotus japonicus chr1.CM0088.610.nd N 0.879
SapurV1A.0476s0200 Salix purpurea SapurV1A.0476s0200 N 0.879
SapurV1A.0019s0320 Salix purpurea SapurV1A.0019s0320 N 0.879
Pavir.Ib00696 Panicum virgatum Pavir.Ib00696 N 0.879
Pavir.J00626 Panicum virgatum Pavir.J00626 N 0.879
SapurV1A.0005s0400 Salix purpurea SapurV1A.0005s0400 N 0.879
Gorai.009G219100 Gossypium raimondii Gorai.009G219100 N 0.879
Gorai.005G231900 Gossypium raimondii Gorai.005G231900 N 0.879
POPTR_0001s30150 Populus trichocarpa POPTR_0001s30150 N 0.879
Bostr.7867s1234 Boechera stricta Bostr.7867s1234 N 0.879
Cagra.1305s0010 Capsella grandiflora Cagra.1305s0010 N 0.879
Aquca_042_00163 Aquilegia coerulea Aquca_042_00163 N 0.879
Aquca_042_00162 Aquilegia coerulea Aquca_042_00162 N 0.879
mgf022238m Mimulus guttatus mgf022238m N 0.879
mgf024863m Mimulus guttatus mgf024863m N 0.879
Aquca_017_00066 Aquilegia coerulea Aquca_017_00066 N 0.879
Cagra.9228s0001 Capsella grandiflora Cagra.9228s0001 N 0.879
Carubv10006623m.g Capsella rubella Carubv10006623m.g N 0.879
evm.TU.supercontig_106.57 Carica papaya evm.TU.supercontig_106.57 N 0.879
evm.TU.supercontig_142.14 Carica papaya evm.TU.supercontig_142.14 N 0.879
gene02560-v1.0-hybrid Fragaria vesca gene02560-v1.0-hybrid N 0.879
Eucgr.I01069 Eucalyptus grandis Eucgr.I01069 N 0.879
Ciclev10030309m.g Citrus clementina Ciclev10030309m.g N 0.879
Carubv10015484m.g Capsella rubella Carubv10015484m.g N 0.879
Ciclev10003450m.g Citrus clementina Ciclev10003450m.g N 0.879
mgf018282m Mimulus guttatus mgf018282m N 0.879
POPTR_0014s01730 Populus trichocarpa POPTR_0014s01730 N 0.879
LPERR12G14550 Leersia perrieri LPERR12G14550 N 0.879
MLOC_60270 Hordeum vulgare MLOC_60270 N 0.879
MLOC_76486 Hordeum vulgare MLOC_76486 N 0.879
LPERR07G17840 Leersia perrieri LPERR07G17840 N 0.879
GSMUA_Achr6G07760_001 Musa acuminata GSMUA_Achr6G07760_001 N 0.879
GRMZM2G395549 Zea mays GRMZM2G395549 N 0.879
GSMUA_Achr3G18870_001 Musa acuminata GSMUA_Achr3G18870_001 N 0.879
GSMUA_Achr4G23240_001 Musa acuminata GSMUA_Achr4G23240_001 N 0.879
MTR_1g018090 Medicago truncatula MTR_1g018090 N 0.879
MTR_1g106460 Medicago truncatula MTR_1g106460 N 0.879
OGLUM07G20330 Oryza glumaepatula OGLUM07G20330 N 0.879
OGLUM09G03740 Oryza glumaepatula OGLUM09G03740 N 0.879
OLONG_006157 Oryza longistaminata OLONG_006157 N 0.879
OBART12G17400 Oryza barthii OBART12G17400 N 0.879
OB12G24200 Oryza brachyantha OB12G24200 N 0.879
MTR_1g106480 Medicago truncatula MTR_1g106480 N 0.879
OB07G26210 Oryza brachyantha OB07G26210 N 0.879
GLYMA20G26991 Glycine max GLYMA20G26991 N 0.879
GLYMA20G26980 Glycine max GLYMA20G26980 N 0.879
Bo7g116460 Brassica oleracea Bo7g116460 N 0.879
Bra011476 Brassica rapa Bra011476 N 0.879
Bra034587 Brassica rapa Bra034587 N 0.879
Bo3g169400 Brassica oleracea Bo3g169400 N 0.879
Bo1g007780 Brassica oleracea Bo1g007780 N 0.879
BGIOSGA023988 Oryza indica BGIOSGA023988 N 0.879
BGIOSGA035917 Oryza indica BGIOSGA035917 N 0.879
Bra036969 Brassica rapa Bra036969 N 0.879
BRADI1G14600 Brachypodium distachyon BRADI1G14600 N 0.879
GLYMA10G40360 Glycine max GLYMA10G40360 N 0.879
GLYMA14G09781 Glycine max GLYMA14G09781 N 0.879
GLYMA17G35423 Glycine max GLYMA17G35423 N 0.879
GLYMA10G40350 Glycine max GLYMA10G40350 N 0.879
RSL2 Arabidopsis lyrata fgenesh2_kg.7__724__AT4G33880.1 N 0.879
BRADI4G03070 Brachypodium distachyon BRADI4G03070 N 0.879
F775_02582 Aegilops tauschii F775_02582 N 0.879
OLONG_014997 Oryza longistaminata OLONG_014997 N 0.879
MTR_5g005110 Medicago truncatula MTR_5g005110 N 0.879
ONIVA12G15960 Oryza nivara ONIVA12G15960 N 0.879
AT2G14760 Arabidopsis thaliana AT2G14760 N 0.879
PGSC0003DMG400021526 Solanum tuberosum PGSC0003DMG400021526 N 0.879
BHLH85 Arabidopsis thaliana AT4G33880 N 0.879
ONIVA07G18960 Oryza nivara ONIVA07G18960 N 0.879
OS07G0588400 Oryza sativa OS07G0588400 N 0.879
OPUNC07G19390 Oryza punctata OPUNC07G19390 N 0.879
ORUFI07G21430 Oryza rufipogon ORUFI07G21430 N 0.879
ORGLA12G0149000 Oryza glaberrima ORGLA12G0149000 N 0.879
ORUFI12G19280 Oryza rufipogon ORUFI12G19280 N 0.879
OPUNC12G15720 Oryza punctata OPUNC12G15720 N 0.879
PGSC0003DMG400036714 Solanum tuberosum PGSC0003DMG400036714 N 0.879
OS12G0589000 Oryza sativa OS12G0589000 N 0.879
OMERI12G12030 Oryza meridionalis OMERI12G12030 N 0.879
OMERI07G17220 Oryza meridionalis OMERI07G17220 N 0.879
LPERR11G16970 Leersia perrieri LPERR11G16970 N 0.877
OGLUM03G07680 Oryza glumaepatula OGLUM03G07680 N 0.877
OPUNC03G07300 Oryza punctata OPUNC03G07300 N 0.877
Eucgr.G01234 Eucalyptus grandis Eucgr.G01234 N 0.877
OMERI03G07360 Oryza meridionalis OMERI03G07360 N 0.877
Eucgr.F02259 Eucalyptus grandis Eucgr.F02259 N 0.877
ORGLA03G0073500 Oryza glaberrima ORGLA03G0073500 N 0.877
OLONG_008046 Oryza longistaminata OLONG_008046 N 0.877
Sb05g025230 Sorghum bicolor Sb05g025230 N 0.877
BGIOSGA011251 Oryza indica BGIOSGA011251 N 0.877
OB03G17860 Oryza brachyantha OB03G17860 N 0.877
PGSC0003DMG400039299 Solanum tuberosum PGSC0003DMG400039299 N 0.877
ORUFI03G07580 Oryza rufipogon ORUFI03G07580 N 0.877
OBART03G07520 Oryza barthii OBART03G07520 N 0.877
ONIVA03G07980 Oryza nivara ONIVA03G07980 N 0.877
OS03G0205300 Oryza sativa OS03G0205300 N 0.877
GSMUA_Achr2G17130_001 Musa acuminata GSMUA_Achr2G17130_001 N 0.876
gene25554-v1.0-hybrid Fragaria vesca gene25554-v1.0-hybrid N 0.870
OBART03G26170 Oryza barthii OBART03G26170 N 0.868
ORGLA03G0242600 Oryza glaberrima ORGLA03G0242600 N 0.868
OPUNC03G23870 Oryza punctata OPUNC03G23870 N 0.868
ONIVA03G27180 Oryza nivara ONIVA03G27180 N 0.868
BGIOSGA010239 Oryza indica BGIOSGA010239 N 0.868
Pavir.Ba01059 Panicum virgatum Pavir.Ba01059 N 0.868
Si032445m.g Setaria italica Si032445m.g N 0.868
OLONG_010636 Oryza longistaminata OLONG_010636 N 0.868
ORUFI03G27070 Oryza rufipogon ORUFI03G27070 N 0.868
OMERI03G23570 Oryza meridionalis OMERI03G23570 N 0.868
Sb02g037990 Sorghum bicolor Sb02g037990 N 0.868
Pavir.Bb01173 Panicum virgatum Pavir.Bb01173 N 0.868
OB03G34210 Oryza brachyantha OB03G34210 N 0.868
OGLUM03G27050 Oryza glumaepatula OGLUM03G27050 N 0.868
GRMZM2G383841 Zea mays GRMZM2G383841 N 0.868
LPERR03G21650 Leersia perrieri LPERR03G21650 N 0.868
GRMZM2G057260 Zea mays GRMZM2G057260 N 0.868
fgenesh2_kg.3__3067__AT2G14760.1 Arabidopsis lyrata fgenesh2_kg.3__3067__AT2G14760.1 N 0.866
TRIUR3_35464 Triticum urartu TRIUR3_35464 N 0.864
F775_02177 Aegilops tauschii F775_02177 N 0.864
F775_02178 Aegilops tauschii F775_02178 N 0.864
Thhalv10003393m.g Eutrema salsugineum Thhalv10003393m.g N 0.859
GLYMA04G04801 Glycine max GLYMA04G04801 N 0.859
GSMUA_Achr9G09600_001 Musa acuminata GSMUA_Achr9G09600_001 N 0.859
Traes_4BL_4B8CA74B8 Triticum aestivum Traes_4BL_4B8CA74B8 N 0.856
GSMUA_AchrUn_randomG07080_001 Musa acuminata GSMUA_AchrUn_randomG07080_001 N 0.855
Traes_5BS_0F8DBB33D Triticum aestivum Traes_5BS_0F8DBB33D N 0.855
GSMUA_Achr6G16890_001 Musa acuminata GSMUA_Achr6G16890_001 N 0.853
TRIUR3_17670 Triticum urartu TRIUR3_17670 N 0.847
MLOC_74022 Hordeum vulgare MLOC_74022 N 0.847
Traes_2DS_7C9C33E09 Triticum aestivum Traes_2DS_7C9C33E09 N 0.847
F775_02706 Aegilops tauschii F775_02706 N 0.847
Traes_2AS_9A3F73BE3 Triticum aestivum Traes_2AS_9A3F73BE3 N 0.847
Traes_2BS_659F9ABB9 Triticum aestivum Traes_2BS_659F9ABB9 N 0.847
BRADI1G22960 Brachypodium distachyon BRADI1G22960 N 0.847
fgenesh1_pg.scaffold_164000047 Physcomitrella patens fgenesh1_pg.scaffold_164000047 N 0.845
estExt_fgenesh1_pg.C_600113 Physcomitrella patens estExt_fgenesh1_pg.C_600113 N 0.845
Traes_5AL_ED57961C7 Triticum aestivum Traes_5AL_ED57961C7 N 0.838
Traes_5DL_3BA7EE3F0 Triticum aestivum Traes_5DL_3BA7EE3F0 N 0.838